Evidence map›Paper›PMID 40360765›Full record

ArticleCommunications chemistry2025

Dual fragmentation via collision-induced and oxygen attachment dissociations using water and its radicals for C=C position-resolved lipidomics.

Hiroaki Takeda, Mami Okamoto, Hidenori Takahashi, Bujinlkham Buyantogtokh, Noriyuki Kishi, Hideyuki Okano, Hiroyuki Kamiguchi, Hiroshi Tsugawa

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hiroaki TakedaDepartment of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan. hiroaki.takeda@aist.go.jp.ORCID http://orcid.org/0000-0002-9299-4748
Mami OkamotoShimadzu Corporation, 1 Nishinokyo-Kuwabaracho Nakagyo-ku, Kyoto, Japan.
Hidenori TakahashiShimadzu Corporation, 1 Nishinokyo-Kuwabaracho Nakagyo-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0001-6887-1724
Bujinlkham BuyantogtokhDepartment of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan.
Noriyuki KishiRIKEN Center for Brain Science, Wako, Saitama, Japan.
Hideyuki OkanoRIKEN Center for Brain Science, Wako, Saitama, Japan.
Hiroyuki KamiguchiRIKEN Center for Brain Science, Wako, Saitama, Japan.ORCID http://orcid.org/0000-0003-1802-6324
Hiroshi TsugawaDepartment of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan. htsugawa@go.tuat.ac.jp.ORCID http://orcid.org/0000-0002-2015-3958

Funding

Japan Agency for Medical Research and Development (AMED) JP25wm0325071MEXT | Japan Science and Technology Agency (JST) JPMJFR230HMEXT | Japan Society for the Promotion of Science (JSPS) 24H00043MEXT | Japan Society for the Promotion of Science (JSPS) 24H00392MEXT | Japan Society for the Promotion of Science (JSPS) 24K21269MEXT | JST | Exploratory Research for Advanced Technology (ERATO) JPMJER2101MEXT | JST | National Bioscience Database Center (NBDC) JPMJND2305
6 · The paper itself

Abstract

Oxygen attachment dissociation (OAD) is a tandem mass spectrometry (MS/MS) technique for annotating the positions of double bonds (C=C) in complex lipids. Although OAD has been used for untargeted lipidomics, its availability has been limited to the positive ion mode, requiring the independent use of a collision-induced dissociation (CID) method. In this study, we demonstrated the OAD MS/MS technique in the negative-ion mode for profiling phosphatidylserines, phosphatidylglycerols, phosphatidylinositols, and sulfatides, where the fragmentation mechanism remained consistent with that in the positive ion mode. Furthermore, we proposed optimal conditions for the simultaneous acquisition of CID- and OAD-specific fragment ions, termed OAciD, where oxygen atoms and hydroxy radicals facilitate C=C position-specific fragmentation, while residual water vapor induces cleavage of low-energy covalent bonds as observed in CID. Finally, theoretical fragment ions were implemented in MS-DIAL 5 to accelerate C=C position-resolved untargeted lipidomics. The OAciD methodology was used to illuminate brain region-specific marmoset lipidomes with C=C positional information, including the estimation of C=C positional isomer ratios. We also characterized the profiles of polyunsaturated fatty acid-containing lipids, finding that lipids containing omega-3 fatty acids were enriched in the cerebellum, whereas those containing omega-6 fatty acids were more abundant in the hippocampus and frontal lobe.

Identifiers

PMID40360765
PMCPMC12075507

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.