Evidence map›Paper›PMID 40362188›Full record

ArticleInternational journal of molecular sciences2025

Comprehensive Characterization and Functional Analysis of the Lateral Organ Boundaries Domain Gene Family in Rice: Evolution, Expression, and Stress Response.

Shang Sun, Jingjing Yi, Peiling Gu, Yongtian Huang, Xin Huang, Hanqing Li, Tingting Fan, Jing Zhao, Ruozhong Wang, Mahmoud Mohamed Gaballah and 2 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. A Comprehensive Profiling of the RicePlants (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shang SunHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Jingjing YiHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.ORCID 0009-0005-5064-6082
Peiling GuHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Yongtian HuangHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Xin HuangHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Hanqing LiHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Tingting FanHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Jing ZhaoHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Ruozhong WangHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.
Mahmoud Mohamed GaballahRice Research and Training Center (RRTC), Field Crops Research Institute, Agricultural Research Center, Sakha, Kafr Elsheikh 33717, Egypt.ORCID 0000-0001-8359-8930
Langtao XiaoHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.ORCID 0000-0003-1786-1950
Haiou LiHunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha 410128, China.ORCID 0009-0006-0710-9633

Funding

Changsha Natural Science Foundation kq2208066National Natural Science Foundation of China 32261143733Natural Science Foundation of Hunan Province 2022JJ30304Natural Science Foundation of Hunan Province 2024JJ5191
6 · The paper itself

Abstract

In this study, the LBD (Lateral Organ Boundaries Domain) gene family, a group of plant-specific transcription factors critical for plant growth and development as well as metabolic regulation, was comprehensively characterized in rice. We identified 36 LBD genes using multi-source genomic data and systematically classified them into Class I (31 genes) and Class II (5 genes). Analysis of their physicochemical properties revealed significant variations in amino acid length, molecular weight, isoelectric points, and hydropathicity. Motif analysis identified conserved LOB domains and other motifs potentially linked to functional diversity. Cis-acting element analysis indicated the involvement of these genes in various biological processes, including light response, hormone signaling, and stress response. Expression profiling demonstrated tissue-specific expression patterns, with several genes, such as

Indexed as

Evolution, MolecularGene Expression Regulation, PlantMultigene FamilyOryzaPlant ProteinsStress, PhysiologicalTranscription FactorsCyclopentanesGene Expression ProfilingOxylipinsPhylogenyPlant Growth RegulatorsCyclopentanesjasmonic acidOxylipinsPlant Growth RegulatorsPlant ProteinsTranscription Factorsgene expressionLBD gene familyricestress responsesystem evolution

Identifiers

PMID40362188
PMCPMC12071882

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.