Evidence map›Paper›PMID 40369451›Full record

ArticleBMC genomics2025

The CNV map construction and ROH analysis of Pinan cattle.

Xingya Song, Zijing Zhang, Shengyan Xing, Xian Liu, Yuqiao Zhang, Jiamei Wang, Shijie Lyu, Xiangnan Wang, Xingshan Qi, Weidong Ma and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Xingya Song *College of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Yangling, Shaanxi, 712100, People's Republic of China.
Zijing Zhang *Institute of Animal Husbandry, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, People's Republic of China.
Shengyan Xing *College of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Yangling, Shaanxi, 712100, People's Republic of China.
Xian Liu *Henan Provincial Livestock Technology Promotion Station, Zhengzhou, Henan, 450008, People's Republic of China.
Yuqiao ZhangCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Yangling, Shaanxi, 712100, People's Republic of China.
Jiamei WangCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Yangling, Shaanxi, 712100, People's Republic of China.
Shijie LyuInstitute of Animal Husbandry, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, People's Republic of China.
Xiangnan WangInstitute of Animal Husbandry, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, People's Republic of China.
Xingshan QiBiyang County Xiananniu Technology Development Co., Ltd, Zhumadian, Henan, 463700, People's Republic of China.
Weidong MaShaanxi Agricultural and Animal Husbandry Seed Farm, Fufeng, Shaanxi, 722203, People's Republic of China.
Chuzhao LeiCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Yangling, Shaanxi, 712100, People's Republic of China.
Eryao WangInstitute of Animal Husbandry, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, People's Republic of China. eryaowang@outlook.com.
Yongzhen HuangCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Yangling, Shaanxi, 712100, People's Republic of China. hyzsci@nwafu.edu.cn.

Funding

Breeding and production of cattle and sheep by scientific and technological innovation team of Henan Academy of Agricultural Sciences 2023TD25China Agriculture Research System of MOF and MARA CARS-37Henan Beef Cattle Industrial Technology System HARS-22-13-SMajor Science and Technology Projects in Henan Province 221100110200National Key R&D Plan 2022YFD1602310STI2030-Major Projects 2023ZD040480206
6 · The paper itself

Abstract

Pinan cattle, as the progeny of crossbreeding improvement between Nanyang cattle and Piedmontese, have attracted attention for their excellent growth performance. In this study, we constructed a copy number variation map by whole genome resequencing of 132 Pinan cattle. In the genome of Pinan cattle, deletion-type copy number variants occupied a higher proportion and only 3.31% of CNVRs overlapped with exonic regions. It showed that Pinan cattle was clearly distinguishable from other breeds and Pinan cattle was closer to Nanyang cattle by population genetic structure analysis based on CNVRs. The degree of inbreeding in the Pinan cattle population was explored by ROH analysis, which showed that the degree of inbreeding in Pinan cattle was lower than that in European beef cattle, suggesting that the risk of inbreeding was low. Candidate genes related to muscle development (CADM3, CNTFR, DOCK3), reproductive traits (SCAPER), embryonic development (RERE) and immune traits (CD84) were identified by V

Indexed as

DNA Copy Number VariationsAnimalsBreedingCattleChromosome MappingGenetics, PopulationInbreedingPolymorphism, Single NucleotideWhole Genome SequencingCopy number variationGenetic structureInbreeding degreePinan cattleRuns of homozygositySeletion analysis

Identifiers

PMID40369451
PMCPMC12077032

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.