Evidence map›Paper›PMID 40371758›Full record

ArticleProtein science : a publication of the Protein Society2025

Identification, validation, and characterization of approved and investigational drugs interfering with the SARS-CoV-2 endoribonuclease Nsp15.

Spyros D Chatziefthymiou, Maria Kuzikov, Sara Afandi, Greta Kovacs, Sukrit Srivastava, Andrea Zaliani, Andrey Gruzinov, Guillaume Pompidor, Michele Lunelli, Golam Rizvee Ahmed and 4 more

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Spyros D ChatziefthymiouPhoton Science, DESY, Hamburg, Germany.ORCID 0000-0001-7569-5474
Maria KuzikovFraunhofer Institute for Translational Medicine and Pharmacology ITMP, Discovery Research ScreeningPort, Hamburg, Germany.ORCID 0000-0001-8771-1865
Sara AfandiDepartment for Structural Infection Biology, Centre for Structural Systems Biology (CSSB) & Helmholtz-Centre for Infection Research, Hamburg, Germany.
Greta KovacsDepartment for Structural Infection Biology, Centre for Structural Systems Biology (CSSB) & Helmholtz-Centre for Infection Research, Hamburg, Germany.
Sukrit SrivastavaDepartment for Structural Infection Biology, Centre for Structural Systems Biology (CSSB) & Helmholtz-Centre for Infection Research, Hamburg, Germany.
Andrea ZalianiFraunhofer Institute for Translational Medicine and Pharmacology ITMP, Discovery Research ScreeningPort, Hamburg, Germany.ORCID 0000-0002-1740-8390
Andrey GruzinovPhoton Science, DESY, Hamburg, Germany.ORCID 0000-0001-8598-5491
Guillaume PompidorPhoton Science, DESY, Hamburg, Germany.ORCID 0009-0001-3254-7735
Michele LunelliDepartment for Structural Infection Biology, Centre for Structural Systems Biology (CSSB) & Helmholtz-Centre for Infection Research, Hamburg, Germany.ORCID 0000-0002-4956-3096
Golam Rizvee AhmedDepartment for Structural Infection Biology, Centre for Structural Systems Biology (CSSB) & Helmholtz-Centre for Infection Research, Hamburg, Germany.ORCID 0009-0005-4064-987X
Jörg LabahnForschungszentrum Jülich, Institute of Complex Systems (ICS-6), Jülich, Germany.
Johanna HakanpääPhoton Science, DESY, Hamburg, Germany.ORCID 0000-0003-0110-1439
Björn WindshügelFraunhofer Institute for Translational Medicine and Pharmacology ITMP, Discovery Research ScreeningPort, Hamburg, Germany.ORCID 0000-0002-4835-3134
Michael KolbeDepartment for Structural Infection Biology, Centre for Structural Systems Biology (CSSB) & Helmholtz-Centre for Infection Research, Hamburg, Germany.ORCID 0000-0002-1219-0249

Funding

DESY Strategic Fund (DSF)HORIZON EUROPE Framework Programme 101137192
6 · The paper itself

Abstract

Since the emergence of SARS-CoV-2 at the end of 2019, the virus has caused significant global health and economic disruptions. Despite the rapid development of antiviral vaccines and some approved treatments such as remdesivir and paxlovid, effective antiviral pharmacological treatments for COVID-19 patients remain limited. This study explores Nsp15, a 3'-uridylate-specific RNA endonuclease, which has a critical role in immune system evasion and hence in escaping the innate immune sensors. We conducted a comprehensive drug repurposing screen and identified 44 compounds that showed more than 55% inhibition of Nsp15 activity in a real-time fluorescence assay. A validation pipeline was employed to exclude unspecific interactions, and dose-response assays confirmed 29 compounds with an IC

Indexed as

Antiviral AgentsCOVID-19 Drug TreatmentDrugs, InvestigationalEndoribonucleasesSARS-CoV-2Viral Nonstructural ProteinsCrystallography, X-RayDrug RepositioningHumansMolecular Docking SimulationAntiviral AgentsDrugs, InvestigationalEndoribonucleasesnidoviral uridylate-specific endoribonucleaseViral Nonstructural Proteinsdrug screeningmolecular dockingrepurposingSARS‐CoV‐2uridine‐specific endoribonuclease Nsp15x‐ray crystal structure

Identifiers

PMID40371758
PMCPMC12079475

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.