Evidence map›Paper›PMID 40375878›Full record

ArticleCancer informatics2025

Identification of Potential Hub Proteins as Theragnostic Targets in Hepatocellular Carcinoma through Comprehensive Quantitative Tissue Proteomics Analysis.

Quratul Abedin, Kulsoom Bibi, Alex von Kriegsheim, Zehra Hashim, Amber Ilyas

Abstract read
In one paragraph

Article in Cancer informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Quratul AbedinDr. Zafar H. Zaidi Center for Proteomics, University of Karachi, Karachi, Sindh, Pakistan.
Kulsoom BibiDr. Zafar H. Zaidi Center for Proteomics, University of Karachi, Karachi, Sindh, Pakistan.
Alex von KriegsheimUniversity of Edinburgh, Edinburgh, Scotland, UK.
Zehra HashimDr. Zafar H. Zaidi Center for Proteomics, University of Karachi, Karachi, Sindh, Pakistan.
Amber IlyasDr. Zafar H. Zaidi Center for Proteomics, University of Karachi, Karachi, Sindh, Pakistan.ORCID https://orcid.org/0000-0002-2994-3884

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: Hepatocellular carcinoma (HCC) is the most common primary liver cancer mainly caused by hepatitis viral infection. Early stage diagnosis is still challenging due to its asymptomatic behavior so there is an urgent need for effective biomarkers. This study aimed to identify effective diagnostic biomarker or therapeutic target for HCC. Method: Label-free quantitative mass spectrometry was performed to analyze protein expression in HCC and control tissues. Protein-protein interaction (PPI) analysis was done using the STRING database and hub proteins were identified by Cytohubba. The survival analysis and expressions profiling of hub proteins were performed by using GEPIA. Functional and pathway enrichment analysis were carried out using Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG). Results: A total of 1539 proteins were identified, of which 116 were differentially expressed proteins (DEPs). PPI network analysis revealed 10 hub proteins; EGFR, GAPDH, HSP90AA1, MMP9, PTPRC, CD44, ANXA5, PECAM1, MMP2, and CDK1. Among these, GAPDH, MMP9, ANXA5, HSP90AA1, and CDK1 were significantly associated with low survival rate ( Conclusion: The hub proteins GAPDH, HSP90AA1, MMP9, ANXA5, and CDK1 demonstrated significant prognostic potential, could be used as promising theragnostic biomarkers for HCC.

Indexed as

hepatocellular carcinomahub proteinsquantitative proteomicstheragnostic marker identification

Identifiers

PMID40375878
PMCPMC12078984

What Socratic holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.