Evidence map›Paper›PMID 40388307›Full record

ArticleGigaScience2025

Multiomics analysis of umbilical cord hematopoietic stem cells from a multiethnic cohort of Hawaii reveals the intergenerational effect of maternal prepregnancy obesity and risks for cancers.

Yuheng Du, Paula A Benny, Yuchen Shao, Ryan J Schlueter, Alexandra Gurary, Annette Lum-Jones, Cameron B Lassiter, Fadhl M AlAkwaa, Maarit Tiirikainen, Dena Towner and 2 more

Abstract read
In one paragraph

Article in GigaScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Yuheng DuDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0001-6665-5892
Paula A BennyDepartment of Obstetrics and Gynecology, University of Hawaii, Honolulu, HI 96826, USA.ORCID 0000-0001-9118-915X
Yuchen ShaoDepartment of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0009-0008-4438-9878
Ryan J SchlueterDepartment of Obstetrics and Gynecology, University of Hawaii, Honolulu, HI 96826, USA.
Alexandra GuraryDepartment of Obstetrics and Gynecology, University of Hawaii, Honolulu, HI 96826, USA.ORCID 0009-0007-3622-4734
Annette Lum-JonesUniversity of Hawaii Cancer Center, Population Sciences of the Pacific Program-Epidemiology, Honolulu, HI 96813, USA.
Cameron B LassiterUniversity of Hawaii Cancer Center, Population Sciences of the Pacific Program-Epidemiology, Honolulu, HI 96813, USA.ORCID 0000-0003-2712-783X
Fadhl M AlAkwaaDepartment of Neurology, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0001-5349-7960
Maarit TiirikainenUniversity of Hawaii Cancer Center, Population Sciences of the Pacific Program-Epidemiology, Honolulu, HI 96813, USA.ORCID 0000-0002-8124-3818
Dena TownerDepartment of Obstetrics and Gynecology, University of Hawaii, Honolulu, HI 96826, USA.
W Steven WardDepartment of Obstetrics and Gynecology, University of Hawaii, Honolulu, HI 96826, USA.ORCID 0000-0002-5025-192X
Lana X GarmireDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-4654-2126

Funding

University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI Pallav Pokhrel · 1996 to 2026
$56.2M
Proteogenomics of Cancer Training ProgramT32CA140044 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAO, ARVIND, SARTOR, MAUREEN AGNES · 2010 to 2024
$3.9M
An Integrative Omics Approach to Identify Biomarkers Related to Preeclampsia and Breast Cancer RisksR01HD084633 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2020
$3.0M
Biomedical Informatics and Data Science Training Program (BIDS-TP)T32GM141746 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Ivo D Dinov, RYAN E MILLS · 2021 to 2026
$2.6M
Cancer precision medicine through spatially informative single cell image and transcriptomics data analysisR01LM012373 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2024
$2.4M
DR. EPS: Drug Repurposing for Extended Patient SurvivalR01LM012907 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2019 to 2022
$1.0M
NCI NIH HHS P30 CA071789NCI NIH HHS T32 CA140044NICHD NIH HHS R01 HD084633NIGMS NIH HHS T32 GM141746NIH HHS T32 GM141746NLM NIH HHS R01 HD084633NLM NIH HHS R01 LM012373NLM NIH HHS R01 LM012907
6 · The paper itself

Abstract

backgroundMaternal obesity is a health concern that may predispose newborns to a high risk of medical problems later in life. To understand the intergenerational effect of maternal obesity, we hypothesized that the maternal obesity effect is mediated by epigenetic changes in the CD34+/CD38-/Lin- hematopoietic stem cells (uHSCs) in the offspring. To investigate this, we conducted a DNA methylation centric multiomics study. We measured DNA methylation and gene expression of the CD34+/CD38-/Lin- uHSCs and metabolomics of the cord blood, all from a multiethnic cohort from Kapiolani Medical Center for Women and Children in Honolulu, Hawaii (n=72, collected between 2016 and 2018).

resultsDifferential methylation analysis unveiled a global hypermethylation pattern in the maternal prepregnancy obese group (BH adjusted P < 0.05), after adjusting for major clinical confounders. KEGG pathway enrichment, WGCNA, and PPI analyses revealed that hypermethylated CpG sites were involved in critical biological processes, including cell cycle, protein synthesis, immune signaling, and lipid metabolism. Utilizing Shannon entropy on uHSCs methylation, we discerned notably higher quiescence of uHSCs impacted by maternal obesity. Additionally, the integration of multiomics data-including methylation, gene expression, and metabolomics-provided further evidence of dysfunctions in adipogenesis, erythropoietin production, cell differentiation, and DNA repair, aligning with the findings at the epigenetic level. Furthermore, we trained a random forest classifier using the CpG sites in the genes of the top pathways associated with maternal obesity, and applied it to predict cancer versus adjacent normal sample labels in 14 Cancer Genome Atlas (TCGA) cancer types. Five of 14 cancers showed balanced accuracy of 0.6 or higher: LUSC (0.87), PAAD (0.83), KIRC (0.71), KIRP (0.63) and BRCA (0.60).

conclusionsThis study revealed the significant correlation between prepregnancy maternal obesity and multiomics-level molecular changes in the uHSCs of offspring, particularly at the DNA methylation level. These maternal-obesity-associated epigenetic markers in uHSCs may contribute to increased risks in certain cancers of the offspring. Larger and multicenter cohort validation studies are warranted to follow up the current single-site study.

Indexed as

Fetal BloodHematopoietic Stem CellsNeoplasmsObesityPregnancy in ObesityAdultCohort StudiesDNA MethylationEpigenesis, GeneticFemaleHawaiiHumansMetabolomicsMultiomicsPregnancycord bloodhematopoietic stem cellsmethylationmultiomicsNative Hawaiianobesitypregnancy

Identifiers

PMID40388307
PMCPMC12087453

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.