Evidence map›Paper›PMID 40394196›Full record

ReviewNature reviews. Genetics2025

Functional synonymous mutations and their evolutionary consequences.

Jianzhi Zhang, Wenfeng Qian

Abstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Detection of theAnimals : an open access journal from MDPI · 2026
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  10. Post-transcriptional effects ofFood chemistry. Molecular sciences · 2026
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  14. Novel Prion Protein Gene (bioRxiv : the preprint server for biology · 2026
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jianzhi ZhangDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA. jianzhi@umich.edu.ORCID http://orcid.org/0000-0001-6141-1290
Wenfeng QianState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. wfqian@genetics.ac.cn.ORCID http://orcid.org/0000-0001-6875-0842

Funding

Genomic and Systemic Approaches to Evolutionary MechanismsR35GM139484 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JIANZHI ZHANG · 2021 to 2026
$3.2M
NIGMS NIH HHS R35 GM139484
6 · The paper itself

Abstract

Synonymous mutations are coding mutations that do not alter protein sequences. Commonly thought to have little to no functional consequence, synonymous mutations have been widely used in evolutionary analyses that require neutral markers, including those foundational for the neutral theory. However, recent studies suggest that synonymous mutations can influence nearly every step in the expression of genetic information and may often be strongly non-neutral. We review the extent and mechanisms of these phenotypic and fitness effects and discuss the implications of the functionality and non-neutrality of synonymous mutations for various analyses and conclusions pertinent to genetics, evolution, conservation and disease.

Indexed as

Evolution, MolecularMutationSilent MutationAnimalsGenetic FitnessHumansPhenotypeSelection, Genetic

Identifiers

PMID40394196
PMCPMC12782807

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.