Evidence map›Paper›PMID 40397673›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

A direct computational assessment of vinculin-actin unbinding kinetics reveals catch-bonding behavior.

Willmor J Peña Ccoa, Fatemah Mukadum, Aubin Ramon, Guillaume Stirnemann, Glen M Hocky

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Stepping Up Enhanced Rate Calculations with EATR-Flooding.Journal of chemical theory and computation · 2026
    Article
  2. Article
  3. Article
  4. A direct computational assessment of vinculin-actin unbinding kinetics reveals catch-bonding behavior.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Willmor J Peña CcoaDepartment of Chemistry, New York University, New York, NY 10003.ORCID 0000-0002-3162-9309
Fatemah MukadumDepartment of Chemistry, New York University, New York, NY 10003.
Aubin RamonCentre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.
Guillaume StirnemannChimie Physique et Chimie pour le Vivant Laboratory, Department of Chemistry, École Normale Supérieure, Paris Sciences et Lettres (PSL) University, Sorbonne University, CNRS, Paris 75005, France.ORCID 0000-0002-5631-5699
Glen M HockyDepartment of Chemistry, New York University, New York, NY 10003.ORCID 0000-0002-5637-0698

Funding

Harnessing simulations to uncover molecular mechanisms of mechanosensingR35GM138312 · NIGMS · NEW YORK UNIVERSITY · PI Glen Hocky · 2020 to 2026
$3.0M
Agence Nationale de la Recherche (ANR) NR-11-LABX-0011-01HHS | National Institutes of Health (NIH) R35GM138312HHS | National Institutes of Health (NIH) R35GM138312-02SNIGMS NIH HHS R35 GM138312Simons Foundation (SF) 839534
6 · The paper itself

Abstract

Vinculin forms a catch bond with the cytoskeletal polymer actin, displaying an increased bond lifetime upon force application. Notably, this behavior depends on the direction of the applied force, which has significant implications for cellular mechanotransduction. In this work, we present a comprehensive molecular dynamics simulation study, employing enhanced sampling techniques to investigate the thermodynamic, kinetic, and mechanistic aspects of this phenomenon at physiologically relevant forces. We dissect a catch bond mechanism in which force shifts vinculin between either a weakly or strongly bound state. Our results demonstrate that models for these states have unbinding times consistent with those from single-molecule studies, and suggest that both have some intrinsic catch-bonding behavior. We provide atomistic insight into this behavior, and show how a directional pulling force can promote the strong or weak state. Crucially, our strategy can be extended to measure the difficult-to-capture effects of small mechanical forces on biomolecular systems in general, and those involved in mechanotransduction more specifically.

Indexed as

ActinsVinculinBiomechanical PhenomenaHumansKineticsMechanotransduction, CellularMolecular Dynamics SimulationProtein BindingThermodynamicsActinsVinculinactincatch bondmolecular dynamicsrate constantsvinculin

Identifiers

PMID40397673
PMCPMC12130851

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.