Evidence map›Paper›PMID 40407417›Full record

ArticleThe Journal of cell biology2025

Pex30-dependent membrane contact sites maintain ER lipid homeostasis.

Joana Veríssimo Ferreira, Yara Ahmed, Tiaan Heunis, Aamna Jain, Errin Johnson, Markus Räschle, Robert Ernst, Stefano Vanni, Pedro Carvalho

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Joana Veríssimo FerreiraSir William Dunn School of Pathology, University of Oxford , Oxford, UK.ORCID 0000-0003-4341-1654
Yara AhmedDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0009-0007-6141-1742
Tiaan HeunisSir William Dunn School of Pathology, University of Oxford , Oxford, UK.ORCID 0000-0003-1987-9484
Aamna JainMedical Biochemistry and Molecular Biology, Saarland University, Homburg, Germany.ORCID 0009-0003-7536-7026
Errin JohnsonSir William Dunn School of Pathology, University of Oxford , Oxford, UK.ORCID 0000-0001-8435-9472
Markus RäschleDepartment of Molecular Genetics, TU Kaiserslautern, Kaiserslautern, Germany.ORCID 0000-0002-6737-7203
Robert ErnstMedical Biochemistry and Molecular Biology, Saarland University, Homburg, Germany.ORCID 0000-0002-0283-3490
Stefano VanniDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0003-2146-1140
Pedro CarvalhoSir William Dunn School of Pathology, University of Oxford , Oxford, UK.ORCID 0000-0002-9691-5277

Funding

Biotechnology and Biological Sciences Research Council BB/W015722/1European Research Council 803952Oxford-EP Abraham Research FundSwiss National Supercomputing Centre s1176Swiss National Supercomputing Centre s1269University of OxfordWellcome TrustWellcome Trust 223153/Z/21/Z
6 · The paper itself

Abstract

In eukaryotic cells, communication between organelles and the coordination of their activities depend on membrane contact sites (MCS). How MCS are regulated under the dynamic cellular environment remains poorly understood. Here, we investigate how Pex30, a membrane protein localized to the endoplasmic reticulum (ER), regulates multiple MCS in budding yeast. We show that Pex30 is critical for the integrity of ER MCS with peroxisomes and vacuoles. This requires the dysferlin (DysF) domain on the Pex30 cytosolic tail. This domain binds to phosphatidic acid (PA) both in vitro and in silico, and it is important for normal PA metabolism in vivo. The DysF domain is evolutionarily conserved and may play a general role in PA homeostasis across eukaryotes. We further show that the ER-vacuole MCS requires a Pex30 C-terminal domain of unknown function and that its activity is controlled by phosphorylation in response to metabolic cues. These findings provide new insights into the dynamic nature of MCS and their coordination with cellular metabolism.

Indexed as

Endoplasmic ReticulumIntracellular MembranesLipid MetabolismMembrane ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsHomeostasisPeroxisomesPhosphatidic AcidsPhosphorylationProtein DomainsVacuolesMembrane ProteinsPhosphatidic AcidsSaccharomyces cerevisiae Proteins

Identifiers

PMID40407417
PMCPMC12101078

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.