Evidence map›Paper›PMID 40413378›Full record

ArticleBMC genomics2025

Preservation of milk in liquid nitrogen during sample collection does not affect the RNA quality for RNA-seq analysis.

Lucía Jiménez-Montenegro, Leopoldo Alfonso, Beatriz Soret, José A Mendizabal, Olaia Urrutia

Abstract read
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Methods for Preserving Human Milk Cellular and Milk Fat Globule RNA.Journal of mammary gland biology and neoplasia · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lucía Jiménez-MontenegroIS-FOOD, School of Agricultural Engineering and Biosciences, Public University of Navarre (UPNA), Campus de Arrosadia, Pamplona, 31006, Spain.
Leopoldo AlfonsoIS-FOOD, School of Agricultural Engineering and Biosciences, Public University of Navarre (UPNA), Campus de Arrosadia, Pamplona, 31006, Spain.
Beatriz SoretIS-FOOD, School of Agricultural Engineering and Biosciences, Public University of Navarre (UPNA), Campus de Arrosadia, Pamplona, 31006, Spain.
José A MendizabalIS-FOOD, School of Agricultural Engineering and Biosciences, Public University of Navarre (UPNA), Campus de Arrosadia, Pamplona, 31006, Spain.
Olaia UrrutiaIS-FOOD, School of Agricultural Engineering and Biosciences, Public University of Navarre (UPNA), Campus de Arrosadia, Pamplona, 31006, Spain. olaia.urrutia@unavarra.es.

Funding

Department of University, Innovation, and Digital Transformation of the Government of Navarre 0011-1408-2022-000024Universidad Pública de Navarra PJUPNA27-2022
6 · The paper itself

Abstract

backgroundStandard procedures for milk sample collection for transcriptome analysis use ice as preservation method, which can affect the RNA stability and requires immediate sample processing. These problems would be eased if the milk samples could be snap-frozen in liquid nitrogen. This study describes the applicability of a new method for milk sample collection and subsequent RNA extraction from milk fat globules, determining whether the quality, integrity and quantity of the RNA extracts met the minimum requirements for downstream RNA-seq.

resultsThe quality of the extracts measured by A

conclusionsMilk preservation in liquid nitrogen is a suitable sample collection method that overcomes the limitations of immediate sample processing required if ice is used. Thus, this procedure, together with the subsequent RNA isolation from milk fat globules and its sequencing by RNA-seq, would provide a practical and a non-invasive method for measuring the mammary epithelial cell transcriptome, improving the feasibility of conducting studies related to mammary gland and lactation physiology.

Indexed as

MilkNitrogenRNARNA-SeqSpecimen HandlingAnimalsGlycolipidsGlycoproteinsLipid DropletsRNA StabilitySequence Analysis, RNAGlycolipidsGlycoproteinsmilk fat globuleNitrogenRNALiquid nitrogenMammary glandMilkMilk fat globuleRNA isolationRNA-sequencing

Identifiers

PMID40413378
PMCPMC12102957

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.