Evidence map›Paper›PMID 40424050›Full record

ArticleThe FEBS journal2025

Anions and citrate inhibit LsAA9A, a lytic polysaccharide monooxygenase (LPMO).

Valerio Di Domenico, Yusuf Theibich, Søren Brander, Jean-Guy Berrin, Katja S Johansen, Kristian E H Frandsen, Leila Lo Leggio

Abstract read
In one paragraph

Article in The FEBS journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Valerio Di DomenicoDepartment of Chemistry, University of Copenhagen, Denmark.
Yusuf TheibichDepartment of Chemistry, University of Copenhagen, Denmark.
Søren BranderDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg, Denmark.
Jean-Guy BerrinINRAE, Aix Marseille Univ., UMR 1163 Biodiversité et Biotechnologie Fongiques (BBF), Marseille, France.
Katja S JohansenDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg, Denmark.
Kristian E H FrandsenDepartment of Chemistry, University of Copenhagen, Denmark.ORCID https://orcid.org/0000-0002-7136-9820
Leila Lo LeggioDepartment of Chemistry, University of Copenhagen, Denmark.ORCID https://orcid.org/0000-0002-5135-0882

Funding

Carlsbergfondet CF16-0673Carlsbergfondet CF17-0533Danmarks Frie Forskningsfond 8021-00273BHelmholtz-GemeinschaftNovo Nordisk Fonden NNF17SA0027704Novo Nordisk Fonden NNF21OC0071799Svenska Forskningsrådet Formas 2019-02496Vetenskapsrådet 2018-07152Villum Fonden VIL50427VINNOVA 2018-04969
6 · The paper itself

Abstract

Lytic polysaccharide monooxygenases (LPMOs) are oxidative enzymes that break the glycosidic linkage in recalcitrant polysaccharides such as cellulose and chitin. The LPMO LsAA9A (AA9 family lytic polysaccharide monooxygenase A) from the basidiomycete fungus Lentinus similis is biochemically and structurally well characterized, with crystallographic complexes with oligosaccharides having been obtained. Chloride ions from the crystallization solution are known to bind to the LsAA9A-substrate complex in crystals at the copper equatorial coordinating position, where activation of the co-substrate oxygen species is expected. An investigation of the effect of high concentration salts on LsAA9A activity showed that salts containing chloride and other halide anions, except for fluoride, had a clear inhibitory effect on the activity at concentrations > 100 mm, although chloride ions are known to increase the LPMO affinity for oligosaccharide binding. Surprisingly, LsAA9A crystals can be transferred for short times to considerably different chemical environments, allowing crystallographic analysis at reduced chloride concentrations. Unfortunately, these washing steps do not eliminate the chloride binding at the copper equatorial coordinating position. Furthermore, we observed that citrate buffer, also present, bound under these changed chemical conditions at the copper active site. This interaction completely blocks access to the oligosaccharide substrate and is additionally supported here by citrate inhibition of LsAA9A activities against azurine cross-linked hydroxyethylcellulose (AZCL-HEC), tamarind xyloglucan, and cellopentaose. The conclusions from our study indicate that citrate should be absolutely avoided in LPMO research, not only because of possible abstraction of copper ions from the LPMO active site but also because it might directly compete with binding of LPMOs to their target substrates.

Indexed as

Citric AcidFungal ProteinsLentinulaMixed Function OxygenasesAnionsChloridesCopperCrystallography, X-RayEnzyme InhibitorsPolysaccharidesAnionsChloridesCitric AcidCopperEnzyme InhibitorsFungal ProteinsMixed Function OxygenasesPolysaccharidesauxiliary activitybiomasscarbohydrate active enzymesinhibitorX‐ray crystallography

Identifiers

PMID40424050
PMCPMC12366280

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.