Evidence map›Paper›PMID 40425655›Full record

ArticleScientific reports2025

Differential gene expression in trabecular bone osteocytes is related to the local strain and strain gradient.

Meghana Machireddy, Sarah Nano, Lucas Debiase, Jonathan Lewis, Sara Cole, Jun Li, Glen L Niebur

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Meghana MachireddyUniversity of Notre Dame, Bioengineering Graduate Program, Notre Dame, IN, USA.
Sarah NanoUniversity of Notre Dame, Bioengineering Graduate Program, Notre Dame, IN, USA.
Lucas DebiaseDepartment of Aerospace and Mechanical Engineering, Notre Dame, IN, USA.
Jonathan LewisDepartment of Aerospace and Mechanical Engineering, Notre Dame, IN, USA.
Sara ColeNotre Dame Integrated Imaging Facility, Notre Dame, IN, USA.
Jun LiDepartment of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN, USA.
Glen L NieburUniversity of Notre Dame, Bioengineering Graduate Program, Notre Dame, IN, USA. gniebur@nd.edu.

Funding

Engineering the Stem Cell Microenvironment for Lymphatic RegenerationR35GM143055 · NIGMS · UNIVERSITY OF NOTRE DAME · PI HANJAYA-PUTRA, DONNY · 2021 to 2025
$2.2M
CXCL5/CXCR2 axis as a therapeutic vulnerability of breast cancer metastasis to boneR01CA252878 · NCI · UNIVERSITY OF NOTRE DAME · PI LITTLEPAGE, LAURIE E. · 2021 to 2025
$1.8M
Spatial correlation of osteocyte gene response to local mechanical strain in bone tissueR21AR075937 · NIAMS · UNIVERSITY OF NOTRE DAME · PI NIEBUR, GLEN L · 2020 to 2021
$351k
NCI NIH HHS R01 CA252878NIAMS NIH HHS R21 AR075937NIGMS NIH HHS R35 GM143055
6 · The paper itself

Abstract

Osteocytes regulate the response of osteoclasts and osteoblasts to mechanical loading through signaling molecules, the levels of which are controlled by post-translational modification or degradation and by differential gene transcription and translation. The magnitude and mode of bone tissue deformation that elicits a transcriptional response in individual osteocytes in situ has been difficult to quantify. We measured SOST, Wnt11, TNF, and FRZB gene expression in osteocytes within loaded and unloaded control porcine trabecular bone explants using RNAScope® and compared the local tissue level strain and strain gradient-which we used as an indicator of potential poroelastic fluid flow-in the tissue surrounding osteocytes with high vs. low gene expression. The measured expression of all four genes differed between loaded and unloaded explants, on average, with the mean SOST expression level decreasing by 45%. In the loaded explants, gene expression was altered from baseline in about 30% of the osteocytes, and they were surrounded by tissue with higher strain and strain gradient than the 20 to 25% of osteocytes that remained near baseline expression. Both deviatoric strain and hydrostatic strain gradient were sensitive and specific predictors of the mechanobiological response for individual genes as well as combinations. SOST expression was highly related to elevated strain gradient, providing evidence that osteocytes respond to fluid flow in the lacunar-canalicular system.

Indexed as

Cancellous BoneGene Expression RegulationOsteocytesStress, MechanicalAnimalsGlycoproteinsSwineTumor Necrosis Factor-alphaWnt ProteinsGlycoproteinsTumor Necrosis Factor-alphaWnt Proteins

Identifiers

PMID40425655
PMCPMC12117145

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.