Evidence map›Paper›PMID 40428392›Full record

ArticleGenes2025

Genetic Background and Gene Essentiality.

Paulina Gąsienica, Katarzyna Toch, Kamila Stefania Zając-Garlacz, Marta Labocha-Derkowska

Abstract read
In one paragraph

Article in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Paulina GąsienicaInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland.
Katarzyna TochInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland.
Kamila Stefania Zając-GarlaczInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland.ORCID 0000-0002-4132-3311
Marta Labocha-DerkowskaInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland.ORCID 0000-0002-0101-4821

Funding

National Science Center 2018/29/B/NZ8/01964
6 · The paper itself

Abstract

BACKGROUND/

objectivesEssential genes are those required for an organism's survival and reproduction. However, gene essentiality is not absolute; it can be highly context-dependent, varying across genetic and environmental conditions. Most previous studies have assessed gene essentiality in a single genetic background, limiting our understanding of its variability. The objective of this study was to investigate how genetic background influences gene essentiality in the multicellular model organism

methodsWe examined gene essentiality in three genetically distinct

resultsOur results demonstrate substantial variation in gene essentiality across genetic backgrounds. Among the 101 genes previously identified as essential in the N2 strain, only 56% were consistently essential in all three strains. We identified 23 genes that were newly essential across all strains, 13 genes essential in two strains, and 9 genes essential in only one strain. These results reveal that a significant proportion of essential genes exhibit strain-dependent essentiality.

conclusionsThis study underscores the importance of genetic context in determining gene essentiality. Our findings suggest that relying on a single genetic background, such as N2, may lead to an incomplete or misleading view of gene essentiality. Understanding context-dependent gene essentiality has important implications for functional genomics, evolutionary biology, and potentially for translational research where genetic background can modulate phenotypic outcomes.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsGenes, EssentialGenetic BackgroundAnimalsRNA InterferenceCaenorhabditis elegans ProteinsCaenorhabditis elegansgene essentialitygenetic backgroundRNAi knockdown

Identifiers

PMID40428392
PMCPMC12111165

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.