Evidence map›Paper›PMID 40429754›Full record

ArticleInternational journal of molecular sciences2025

Transcriptomic Analysis to Understand the Nitrogen Stress Response Mechanism in BNI-Enabled Wheat.

Chandra Nath Mishra, Sushma Kumari Pawar, Swati Sharma, Arun Thakur, Sabhyata Sabhyata, Shubham Mishra, Satish Kumar, Om Prakash Gupta, Arun Kumar Joshi, Ratan Tiwari

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chandra Nath MishraICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.ORCID 0000-0003-2369-0510
Sushma Kumari PawarICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.
Swati SharmaICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.
Arun ThakurICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.ORCID 0009-0007-6716-720X
Sabhyata SabhyataICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.
Shubham MishraICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.
Satish KumarICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.
Om Prakash GuptaICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.
Arun Kumar JoshiInternational Maize and Wheat Improvement Center (CIMMYT), NASC Complex, DPS Marg, New Delhi 110012, India.
Ratan TiwariICAR-Indian Institute of Wheat and Barley Research, Karnal 132001, India.

Funding

JICA Project No 1014459
6 · The paper itself

Abstract

A comparative transcriptomic analysis was conducted for the nitrogen-efficient (BNI-Munal) and derivative parent Munal wheat genotypes to unravel the gene expression patterns across four nitrogen levels (0%, 50%, 75%, and 100%). Analyzing the genes of BNI-enabled wheat helps us understand how they are expressed differently, which heavily influences BNI activity. Grain yield and 1000-grain weight were higher in BNI Munal than in Munal. All the other traits were similar in performance. Varying nitrogen dosages led to significant differences in gene expression patterns between the two genotypes. Genes related to binding and catalytic activity were prevalent among molecular functions, while genes corresponding to cellular anatomical entities dominated the cellular component category. Differential expression was observed in 371 genes at 0%N, 261 genes at 50%N, 303 genes at 75%N, and 736 genes at 100%N. Five unigenes (three upregulated and two downregulated) were consistently expressed across all nitrogen levels. Further analysis of upregulated unigenes identified links to the NrpA gene (involved in nitrogen regulation), tetratricopeptide repeat-containing protein (PPR), and cytokinin dehydrogenase 2. Analysis of downregulated genes pointed to associations with the

Indexed as

Gene Expression ProfilingNitrogenStress, PhysiologicalTranscriptomeTriticumGene Expression Regulation, PlantGenotypePlant ProteinsNitrogenPlant ProteinsBNInitrification inhibitiontranscriptomicsunigenewheat

Identifiers

PMID40429754
PMCPMC12111241

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.