Evidence map›Paper›PMID 40436846›Full record

ArticleNature communications2025

Repeated loss of function at HD mating-type genes and of recombination in anther-smut fungi.

Elise A Lucotte, Paul Jay, Quentin Rougemont, Loreleï Boyer, Amandine Cornille, Alodie Snirc, Amandine Labat, Elizabeth Chahine, Marine Duhamel, Alice Namias and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Host skin lipids triggerbioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Chromosome-scale genome assembly ofFrontiers in microbiology · 2026
    Article
  6. Article
  7. Article
  8. Tracing the evolution and genomic dynamics of mating-type loci inbioRxiv : the preprint server for biology · 2025
    Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Elise A LucotteUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France. elise.lucotte@cnrs.fr.ORCID http://orcid.org/0000-0001-8442-2654
Paul JayUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.ORCID http://orcid.org/0000-0001-5979-1263
Quentin RougemontUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.
Loreleï BoyerUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.ORCID http://orcid.org/0000-0002-6976-1305
Amandine CornilleUniversité Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE-Le Moulon, Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0002-5348-7081
Alodie SnircUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.ORCID http://orcid.org/0009-0003-2121-0197
Amandine LabatUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.
Elizabeth ChahineUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.
Marine DuhamelUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.ORCID http://orcid.org/0000-0002-8069-6292
Alice NamiasUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.
Jacob GendelmanDepartment of Biology, Amherst College, Amherst, MA, USA.
Wen-Juan MaDepartment of Biology, Amherst College, Amherst, MA, USA.ORCID http://orcid.org/0000-0003-2585-6406
Roxanne K HayesDepartment of Biology, Program on Disease Evolution, University of Louisville, Louisville, KY, USA.
Shikhi BaruriDepartment of Biology, Program on Disease Evolution, University of Louisville, Louisville, KY, USA.
Joseph P HamDepartment of Biology, Program on Disease Evolution, University of Louisville, Louisville, KY, USA.
Michael H PerlinDepartment of Biology, Program on Disease Evolution, University of Louisville, Louisville, KY, USA.
Michael E HoodDepartment of Biology, Amherst College, Amherst, MA, USA.
Ricardo C Rodríguez de la VegaUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France.ORCID http://orcid.org/0000-0002-9852-6654
Tatiana GiraudUniversité Paris-Saclay, CNRS, AgroParisTech, Ecologie Société Evolution, Gif sur Yvette, France. tatiana.giraud@universite-paris-saclay.fr.ORCID http://orcid.org/0000-0002-2685-6478

Funding

Mating Compatibility and Degeneration of Non-Recombining ChromosomesR15GM119092 · NIGMS · AMHERST COLLEGE · PI HOOD, MICHAEL E. · 2017 to 2017
$445k
EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 832352NIGMS NIH HHS R15 GM119092
6 · The paper itself

Abstract

Basidiomycete fungi typically have two mating-type loci controlling mating compatibility, HD and PR, residing on different chromosomes. Loss-of-function in mating compatibility has been reported at the PR genes in a few heterothallic basidiomycetes, but not for the HD genes. In Microbotryum anther-smut fungi, there have been repeated linkage events between the HD and PR loci through chromosome fusions, leading to non-recombining regions. Here, we found that two sister Microbotryum species parasitizing Dianthus plants, M. superbum and M. shykoffianum, as well as the distantly related M. scorzonerae, have their HD and PR loci on different chromosomes, but with the PR chromosome fused with a part of the ancestral HD chromosome. In addition, recombination suppression has extended stepwise, generating evolutionary strata. In all three species, the HD genes lost their function in mating compatibility, natural diploid strains being often homozygous at the HD locus. Strains could be homozygous for a disrupted HD2 gene, that was hardly expressed during mating. Mating tests confirmed that a single genetic factor controlled mating compatibility and that haploid strains with identical HD alleles could mate and produce hyphae. This study shows that a unifactorial mating-type determinism can evolve, repeatedly, from a bifactorial system, by different mechanisms.

Indexed as

BasidiomycotaGenes, Mating Type, FungalRecombination, GeneticChromosomes, Fungal

Identifiers

PMID40436846
PMCPMC12119880

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.