Evidence map›Paper›PMID 40438323›Full record

ArticleFrontiers in genetics2025

Scaffolded and annotated nuclear and organelle genomes of the North American brown alga

Kelly DeWeese, Gary Molano, Sara Calhoun, Anna Lipzen, Jerry Jenkins, Melissa Williams, Christopher Plott, Jayson Talag, Jane Grimwood, Jean-Luc Jannink and 5 more

Abstract read
In one paragraph

Article in Frontiers in genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Kelly DeWeeseDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States.
Gary MolanoDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States.
Sara CalhounUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Anna LipzenUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Jerry JenkinsGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, United States.
Melissa WilliamsGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, United States.
Christopher PlottGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, United States.
Jayson TalagArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ, United States.
Jane GrimwoodGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, United States.
Jean-Luc JanninkUS Department of Agriculture, Agricultural Research Service (USDA-ARS), Ithaca, NY, United States.
Igor V GrigorievUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
Jeremy SchmutzGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, United States.
Charles YarishDepartment of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT, United States.
Sergey NuzhdinDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States.
Scott LindellDepartment of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Increasing the genomic resources of emerging aquaculture crop targets can expedite breeding processes as seen in molecular breeding advances in agriculture. High quality annotated reference genomes are essential to implement this relatively new molecular breeding scheme and benefit research areas such as population genetics, gene discovery, and gene mechanics by providing a tool for standard comparison. The brown macroalga

Indexed as

brown macroalgacomparative genomicsgenomegenomic breedingkelp aquacultureSaccharina latissimasugar kelp

Identifiers

PMID40438323
PMCPMC12116465

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.