Evidence map›Paper›PMID 40441890›Full record

ArticleGenes & development2025

NOTCH1 S2513 is critical for the regulation of NICD levels impacting the segmentation clock in hiPSC-derived PSM cells and somitoids.

Hedda A Meijer, Adam Hetherington, Sara J Johnson, Rosie L Gallagher, Izzah N Hussein, Yuqi Weng, Jess M Rae, Tomas E J C Noordzij, Margarita Kalamara, Thomas J Macartney and 7 more

Abstract read
In one paragraph

Article in Genes & development, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Hedda A MeijerDivision of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom; hmeijer001@dundee.ac.uk j.k.dale@dundee.ac.uk.ORCID 0000-0001-6695-4956
Adam Hetherington *Division of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Sara J Johnson *Division of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Rosie L GallagherDivision of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Izzah N HusseinDivision of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Yuqi WengDivision of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Jess M RaeDivision of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Tomas E J C NoordzijHubrecht Institute, KNAW (Royal Netherlands Academy of Arts and Sciences), University Medical Center Utrecht, Utrecht 3584 CT, the Netherlands.
Margarita KalamaraHuman Pluripotent Stem Cell Facility, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Thomas J MacartneyMRC Protein Phosphorylation and Ubiquitylation Unit (MRC-PPU), School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.ORCID 0000-0002-6745-183X
Lindsay DavidsonHuman Pluripotent Stem Cell Facility, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
David M A MartinD'Arcy Thompson Unit, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Marek GierlinskiDivision of Computational Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.ORCID 0000-0001-9149-3514
Paul DaviesMRC Protein Phosphorylation and Ubiquitylation Unit (MRC-PPU), School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.
Katharina F SonnenHubrecht Institute, KNAW (Royal Netherlands Academy of Arts and Sciences), University Medical Center Utrecht, Utrecht 3584 CT, the Netherlands.ORCID 0000-0002-2902-9419
Philip J MurrayMathematics, School of Science and Engineering, University of Dundee, Dundee DD1 4HN, United Kingdom.
J Kim DaleDivision of Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom; hmeijer001@dundee.ac.uk j.k.dale@dundee.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The segmentation clock is a molecular oscillator that regulates the timing of somite formation in the developing vertebrate embryo. NOTCH signaling is one of the key pathways required for proper functioning of the segmentation clock. Aberrant NOTCH signaling results in developmental abnormalities such as congenital scoliosis as well as diseases such as T-cell acute lymphoblastic lymphoma (T-ALL). In this study, we analyzed the effects of a mutation detected in T-ALL patients on somitogenesis using human iPSC-derived PSM cells and somitoids. Mutation of NOTCH1 serine 2513 into alanine compromises the interaction of Notch intracellular domain (NICD) with the F-box protein FBXW7 and consequently increases NICD stability and NICD levels in PSM cells. Moreover, the mutation impairs several aspects of clock gene oscillations such as signal intensity, periodicity, directionality of the oscillations, and the ability to sustain oscillations. Furthermore, it restricts the ability of somitoids to polarize, elongate, and form paired segments. The data suggest a mechanism by which post-translational modification of a key segmentation clock component plays a crucial role in vertebrate axis segmentation.

Indexed as

Biological ClocksInduced Pluripotent Stem CellsReceptor, Notch1SomitesF-Box-WD Repeat-Containing Protein 7Gene Expression Regulation, DevelopmentalHumansMutationPrecursor T-Cell Lymphoblastic Leukemia-LymphomaSignal TransductionF-Box-WD Repeat-Containing Protein 7NOTCH1 protein, humanReceptor, Notch1hiPSCNOTCH1PSMsegmentation clocksomitogenesissomitoid

Identifiers

PMID40441890
PMCPMC12404203

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.