Evidence map›Paper›PMID 40442316›Full record

ArticleNature structural & molecular biology2025

Structure and activation of the human autophagy-initiating ULK1C:PI3KC3-C1 supercomplex.

Minghao Chen, Thanh N Nguyen, Xuefeng Ren, Grace Khuu, Annan S I Cook, Yuanchang Zhao, Ahmet Yildiz, Michael Lazarou, James H Hurley

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Regulation and roles of mammalian mitophagy.Nature reviews. Molecular cell biology · 2026
    Review
  9. Article
  10. The Human Autophagy Core Complexes.Annual review of biochemistry · 2026
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Minghao ChenDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-7668-3974
Thanh N NguyenAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.ORCID http://orcid.org/0000-0001-9698-0020
Xuefeng RenDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-4822-4316
Grace KhuuAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.ORCID http://orcid.org/0000-0002-2550-0605
Annan S I CookCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-6415-9107
Yuanchang ZhaoDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-1458-5321
Ahmet YildizDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-4792-174X
Michael LazarouAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.ORCID http://orcid.org/0000-0003-2150-5545
James H HurleyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA. jimhurley@berkeley.edu.ORCID http://orcid.org/0000-0001-5054-5445

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008295 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H, WEMMER, DAVID E · 1989 to 2022
$8.1M
The Mechanism and Regulation of the Dynein Transport MachineryR35GM136414 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Ahmet Yildiz · 2020 to 2026
$5.1M
The autophagy core complexes in neuronal quality controlR01NS134598 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI James H Hurley · 2025 to 2026
$1.0M
NIGMS NIH HHS R35 GM136414NIGMS NIH HHS T32 GM008295NINDS NIH HHS R01 NS134598
6 · The paper itself

Abstract

The Unc-51-like kinase protein kinase complex (ULK1C) is the most upstream and central player in the initiation of macroautophagy in mammals. Here, we determined the cryo-electron microscopy structure of the human ULK1C core at amino-acid-level resolution. We also determined a moderate-resolution structure of the ULK1C core in complex with another autophagy core complex, the class III phosphatidylinositol 3-OH kinase complex I (PI3KC3-C1). We show that the two complexes coassemble through extensive contacts between the FIP200 scaffold subunit of ULK1C and the VPS15, ATG14 and BECN1 subunits of PI3KC3-C1. The FIP200:ATG13:ULK1 core of ULK1C undergoes a rearrangement from 2:1:1 to 2:2:2 stoichiometry in the presence of PI3KC3-C1. This suggests a structural mechanism for the initiation of autophagy through formation of a ULK1C:PI3KC3-C1 supercomplex and dimerization of ULK1 on the FIP200 scaffold.

Indexed as

AutophagyAutophagy-Related Protein-1 HomologClass III Phosphatidylinositol 3-KinasesIntracellular Signaling Peptides and ProteinsAdaptor Proteins, Vesicular TransportAutophagy-Related ProteinsBeclin-1Cryoelectron MicroscopyHumansModels, MolecularProtein BindingAdaptor Proteins, Vesicular TransportATG13 protein, humanATG14 protein, humanAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsBeclin-1BECN1 protein, humanClass III Phosphatidylinositol 3-KinasesIntracellular Signaling Peptides and ProteinsULK1 protein, human

Identifiers

PMID40442316
PMCPMC12440827

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.