Evidence map›Paper›PMID 40443299›Full record

ArticleJournal of inherited metabolic disease2025

A Multiomic Network Approach to Uncover Disease Modifying Mechanisms of Inborn Errors of Metabolism.

Aaron Bender, Pablo Ranea-Robles, Evan G Williams, Mina Mirzaian, J Alexander Heimel, Christiaan N Levelt, Ronald J Wanders, Johannes M Aerts, Jun Zhu, Johan Auwerx and 2 more

Abstract read
In one paragraph

Article in Journal of inherited metabolic disease, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Aaron BenderGraduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Pablo Ranea-RoblesDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.ORCID https://orcid.org/0000-0001-6478-3815
Evan G WilliamsLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Mina MirzaianDepartment of Clinical Chemistry, Erasmus MC, University Medical Center, Rotterdam, the Netherlands.
J Alexander HeimelCircuits Structure and Function Group, Netherlands Institute for Neuroscience, Amsterdam, the Netherlands.
Christiaan N LeveltMolecular Visual Plasticity Group, Netherlands Institute for Neuroscience, Amsterdam, the Netherlands.
Ronald J WandersDepartment of Clinical Chemistry and Pediatrics, Laboratory Genetic Metabolic Diseases, Emma Children's Hospital, Amsterdam UMC Location University of Amsterdam, Amsterdam, the Netherlands.
Johannes M AertsDepartment of Medical Biochemistry, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Jun ZhuDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Johan AuwerxLaboratory of Integrative and Systems Physiology, Interfaculty Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Sander M HoutenDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.ORCID https://orcid.org/0000-0002-6167-9147
Carmen A ArgmannDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Funding

Epigenetic Control of Human Beta Cell ProliferationR01DK116873 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ARGMANN, CARMEN, SCOTT, DONALD K. · 2018 to 2022
$3.2M
Novel pathophysiological insights into mitochondrial fatty acid oxidation disordersR01DK113172 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HOUTEN, SANDER MICHEL · 2017 to 2020
$2.1M
European Research Council ERC-AdG-787702Leona M. and Harry B. Helmsley Charitable TrustNIDDK NIH HHS R01 DK113172NIDDK NIH HHS R01 DK116873Schweizerischer Nationalfonds zur Frderung der Wissenschaftlichen Forschung 31003A-179435
6 · The paper itself

Abstract

For many inborn errors of metabolism (IEM) the understanding of disease mechanisms remains limited, in part explaining their unmet medical needs. The expressivity of IEM disease phenotypes is affected by disease-modifying factors, including rare and common polygenic variation. We hypothesize that we can identify these modulating pathways using molecular signatures of IEM in combination with multiomic data and gene regulatory networks generated from non-IEM animal and human populations. We tested this approach by identifying and subsequently validating glucocorticoid signaling as a candidate modifier of mitochondrial fatty acid oxidation disorders, and recapitulating complement signaling as a modifier of inflammation in Gaucher disease. Our work describes a novel approach that can overcome the rare disease-rare data dilemma and reveal new IEM pathophysiology and potential drug targets using multiomics data in seemingly healthy populations.

Indexed as

Gene Regulatory NetworksMetabolism, Inborn ErrorsAnimalsGaucher DiseaseHumansPhenotypeSignal TransductionBayesian gene regulatory networksgenetic reference populationmetabolomicsmouse modelsQTL mappingtranscriptomics

Identifiers

PMID40443299
PMCPMC12129342

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.