Evidence map›Paper›PMID 40445397›Full record

ArticleCurrent microbiology2025

Transcriptomic Response Pathways of Yeast to Crucial Polyphenolic Acids in Rosmarinus Acid Biosynthesis.

Tao Xu, Jun-Lu Duan, Samuel Ntakirutimana, Li Wang, Zhi-Hua Liu, Chun Li, Bing-Zhi Li

Abstract read
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In one paragraph

Article in Current microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tao Xu *Frontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, People's Republic of China.
Jun-Lu Duan *Frontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, People's Republic of China.
Samuel NtakirutimanaFrontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, People's Republic of China.
Li WangFrontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, People's Republic of China.
Zhi-Hua LiuFrontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, People's Republic of China.
Chun LiKey Lab for Industrial Biocatalysis, Ministry of Education, Department of Chemical Engineering and Center for Synthetic and System Biology, Tsinghua University, Beijing, 100084, People's Republic of China.
Bing-Zhi LiFrontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, People's Republic of China. bzli@tju.edu.cn.ORCID http://orcid.org/0000-0003-4121-3048

Funding

Tianjin Municipal Science and Technology Bureau 21JCZXJC00020
6 · The paper itself

Abstract

Rosmarinic acid (RA) is a natural polyphenolic compound with various biological and pharmaceutical activities. Due to the limited availability in plant sources and the complexity of its chemical synthesis, the biosynthesis of RA shows great potential. However, few studies have investigated RA biosynthesis in S. cerevisiae, and inhibitory effects from its biosynthesis on intrinsic metabolic pathways remain unclear. In this study, RNA-seq technology was employed to investigate the stress response of S. cerevisiae to RA and its precursors (caffeic acid, CA and salvianic acid, SAA). The results revealed an increased inhibitory effect with a variation number of differentially expressed genes (DEGs): 338 for 200-mg/L SAA, 510 for 200-mg/L CA, and 934 for 200-mg/L RA. Furthermore, trends analysis of DEGs expression level uncovered similar stress response patterns of S. cerevisiae under RA and SAA, indicating a shared inhibition mechanism. Common response pathways, including ribosome biogenesis, RNA polymerase biosynthesis, and purine and pyrimidine metabolism, were elucidated. Additionally, common regulated genes (HSP12, PAU4, TIR3) and different regulated genes (UTP6, NAN1, IMP4) in aforementioned pathways were identified. Unique genes and pathways were also mapped to reveal the special response mechanism to different polyphenolic acids, such as oxidative phosphorylation for RA and amino acid metabolism for CA. Overall, this work provides a foundation for understanding transcriptomic response of yeast to RA and RA biosynthesis.

Indexed as

CinnamatesDepsidesPolyphenolsSaccharomyces cerevisiaeTranscriptomeGene Expression ProfilingGene Expression Regulation, FungalRosmarinic AcidSaccharomyces cerevisiae ProteinsCinnamatesDepsidesPolyphenolsRosmarinic AcidSaccharomyces cerevisiae Proteins

Identifiers

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.