Evidence map›Paper›PMID 40447603›Full record

ArticleNature communications2025

Ultrapotent SARS coronavirus-neutralizing single-domain antibodies that clamp the spike at its base.

Sieglinde De Cae, Inge Van Molle, Loes van Schie, Sophie R Shoemaker, Julie Deckers, Nincy Debeuf, Sahine Lameire, Wim Nerinckx, Kenny Roose, Daria Fijalkowska and 24 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Trial
  2. Article
  3. Monoclonal Antibodies Targeting Bacterial Infections: A Broad Review of the Field.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2026
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Sieglinde De CaeVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Inge Van MolleVIB-VUB Center for Structural Biology Research, VIB, Brussels, Belgium.
Loes van SchieVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.ORCID http://orcid.org/0000-0003-2588-9750
Sophie R ShoemakerDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5278-2361
Julie DeckersLaboratory of Immunoregulation and Mucosal Immunology, VIB Center for Inflammation Research, Ghent, Belgium.
Nincy DebeufLaboratory of Immunoregulation and Mucosal Immunology, VIB Center for Inflammation Research, Ghent, Belgium.ORCID http://orcid.org/0000-0002-4754-4772
Sahine LameireLaboratory of Immunoregulation and Mucosal Immunology, VIB Center for Inflammation Research, Ghent, Belgium.
Wim NerinckxVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Kenny RooseVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.ORCID http://orcid.org/0000-0002-5270-4603
Daria FijalkowskaVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Simon DevosVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Anne-Sophie De SmetVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Jackeline Cecilia Zavala MarchanVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Toon VennemanExeVir Bio BV, Gent, Belgium.
Koen SedeynVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.ORCID http://orcid.org/0000-0002-1303-1629
Lejla MujanovicVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Marlies BallegeerVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Manon VanheerswynghelsLaboratory of Immunoregulation and Mucosal Immunology, VIB Center for Inflammation Research, Ghent, Belgium.
Caroline De WolfLaboratory of Immunoregulation and Mucosal Immunology, VIB Center for Inflammation Research, Ghent, Belgium.
Hans DemolVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Jasper ZuallaertVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Pieter VanhaverbekeVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Gholamreza Hassanzadeh GhassabehVIB Nanobody Core, Vrije Universiteit Brussel, Brussels, Belgium.
Chiara LonigroExeVir Bio BV, Gent, Belgium.ORCID http://orcid.org/0000-0002-9523-7929
Viki BockstalExeVir Bio BV, Gent, Belgium.
Manuela RinaldiExeVir Bio BV, Gent, Belgium.
Rana AbdelnabiVirology, Antiviral Drug & Vaccine Reasearch Group, Department of Microbiology and Transplantation, Rega Institute for Medical Research, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0001-9771-7312
Johan NeytsVirology, Antiviral Drug & Vaccine Reasearch Group, Department of Microbiology and Transplantation, Rega Institute for Medical Research, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-0033-7514
Susan MarquseeDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-7648-2163
Bart N LambrechtLaboratory of Immunoregulation and Mucosal Immunology, VIB Center for Inflammation Research, Ghent, Belgium.
Nico CallewaertVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.ORCID http://orcid.org/0000-0003-2069-6917
Han RemautVIB-VUB Center for Structural Biology Research, VIB, Brussels, Belgium.ORCID http://orcid.org/0000-0002-9775-4102
Xavier SaelensVIB Center for Medical Biotechnology, VIB, Ghent, Belgium. xavier.saelens@vib-ugent.be.ORCID http://orcid.org/0000-0002-3861-6965
Bert SchepensVIB Center for Medical Biotechnology, VIB, Ghent, Belgium. bert.schepens@vib-ugent.be.ORCID http://orcid.org/0000-0002-2028-1984

Funding

EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) grant agreement No 101045949Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) FWO Research project 3G0G4820Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) FWO Research project G0G4920NFonds Wetenschappelijk Onderzoek (Research Foundation Flanders) FWOsb PhD student fellowship 1S95723NFonds Wetenschappelijk Onderzoek (Research Foundation Flanders) G0H7322N EOS ID: 40007527Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) G0H7518N EOS ID: 30981113Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) Research project G0B1917NFonds Wetenschappelijk Onderzoek (Research Foundation Flanders) Research project G0G4920N
6 · The paper itself

Abstract

Therapeutic monoclonal antibodies can prevent severe disease in SARS-CoV-2 exposed individuals. However, currently circulating virus variants have evolved to gain significant resistance to nearly all neutralizing human immune system-derived therapeutic monoclonal antibodies that had previously been emergency-authorized for use in the clinic. Here, we describe the discovery of a panel of single-domain antibodies (VHHs) directed against the spike protein S2 subunit that broadly neutralize SARS-CoV-1 and -2 with unusually high potency. One of these VHHs tightly clamps the spike's monomers at a highly conserved, quaternary epitope in the membrane proximal part of the trimeric Heptad Repeat 2 (HR2) coiled-coil, thereby locking the HR2 in its prefusion conformation. Low dose systemic administration of a VHH-human IgG1 Fc fusion prevented SARS-CoV-2 infection in two animal models. Pseudovirus escape selection experiments demonstrate that the very rare escape variants are rendered almost non-infectious. This VHH-based antibody with a highly potent mechanism of antiviral action forms the basis for a new class of pan-sarbecovirus neutralizing biologics, which are currently under development. In addition, the unique quaternary binding mode of the VHHs to the prefusion HR2 could be exploited for other class I fusion proteins.

Indexed as

Antibodies, NeutralizingAntibodies, ViralSARS-CoV-2Severe acute respiratory syndrome-related coronavirusSingle-Domain AntibodiesSpike Glycoprotein, CoronavirusAnimalsCOVID-19EpitopesFemaleHEK293 CellsHumansMiceAntibodies, NeutralizingAntibodies, ViralEpitopesSingle-Domain AntibodiesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID40447603
PMCPMC12125293

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.