Evidence map›Paper›PMID 40447622›Full record

ArticleNature communications2025

Bacterial microcompartments and energy metabolism drive gut colonization by Bilophila wadsworthia.

Lizbeth Sayavedra, Muhammad Yasir, Andrew Goldson, Arlaine Brion, Gwenaelle Le Gall, Mar Moreno-Gonzalez, Annalisa Altera, Michael D Paxhia, Martin Warren, George M Savva and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Article
  3. Expanding the diversity ofInternational journal of systematic and evolutionary microbiology · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Advances in microbial sulfoquinovose catabolism.Frontiers in microbiology · 2026
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Gut microbes
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lizbeth SayavedraQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK. lizbeth.sayavedra@quadram.ac.uk.ORCID http://orcid.org/0000-0001-5814-9471
Muhammad YasirQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0001-9437-2996
Andrew GoldsonQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0002-7132-2459
Arlaine BrionQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0001-5107-9212
Gwenaelle Le GallCentre for Microbial Interactions, Norwich Research Park, Norwich, NR4 7UG, UK.ORCID http://orcid.org/0000-0002-1379-2196
Mar Moreno-GonzalezQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0002-5840-5751
Annalisa AlteraQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.
Michael D PaxhiaQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0001-9445-6719
Martin WarrenQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.
George M SavvaQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0001-9190-124X
A Keith TurnerQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0002-3680-6343
Naiara BerazaQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0003-0718-0940
Arjan NarbadQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.ORCID http://orcid.org/0000-0003-2968-7558

Funding

RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/Z514445/10RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) Food Microbiome & Health ISP BB/X011054/1 and its constituent project BBS/E/QU/230001
6 · The paper itself

Abstract

High-fat diets reshape gut microbiota composition and promote the expansion of Bilophila wadsworthia, a sulfidogenic bacterium linked to inflammation and gut barrier dysfunction. The genetic basis for its colonisation and physiological effects remain poorly understood. Here, we show that B. wadsworthia colonises the gut of germ-free male mice fed a high-fat diet by relying on genes involved in microcompartment formation and anaerobic energy metabolism. Using genome-wide transposon mutagenesis, metatranscriptomics and metabolomics, we identify 34 genes essential for gut colonisation, including two clusters encoding a bacterial microcompartment (BMC), and a NADH dehydrogenase (hdrABC-flxABCD) complex. These systems enable B. wadsworthia to metabolise taurine and isethionate, producing H

Indexed as

BilophilaEnergy MetabolismGastrointestinal MicrobiomeAnimalsDiet, High-FatEthanolMaleMiceMice, Inbred C57BLTaurineEthanolTaurine

Identifiers

PMID40447622
PMCPMC12125255

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.