Evidence mapPaperPMID 40456502Full record

ArticleJournal of biomedical informatics2025

A trajectory-informed model for detecting drug-drug-host interaction from real-world data.

Yi Shi, Anna Sun, Hongmei Nan, Yuedi Yang, Jing Xu, Michael T Eadon, Jing Su, Pengyue Zhang

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Article in Journal of biomedical informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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5 · Who and what money

Authors and funding

8 authors.

Yi ShiDepartment of Biostatistics and Health Data Science, Indiana University, Indianapolis, IN, USA.
Anna SunDepartment of Biostatistics and Health Data Science, Indiana University, Indianapolis, IN, USA.
Hongmei NanDepartment of Epidemiology, Richard M. Fairbanks School of Public Health, Indiana University, Indianapolis, IN, USA.
Yuedi YangDepartment of Biostatistics and Health Data Science, Indiana University, Indianapolis, IN, USA.
Jing XuDepartment of Biostatistics and Health Data Science, Indiana University, Indianapolis, IN, USA.
Michael T EadonDepartment of Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Jing SuDepartment of Biostatistics and Health Data Science, Indiana University, Indianapolis, IN, USA.
Pengyue ZhangDepartment of Biostatistics and Health Data Science, Indiana University, Indianapolis, IN, USA. Electronic address: zhangpe@iu.edu.

Funding

Revealing Health Trajectories of Chronic Kidney Disease for Precision MedicineR01LM013771 · INDIANA UNIVERSITY INDIANAPOLIS · 2025 to 2025
$329k
NLM NIH HHS R01 LM013771
6 · The paper itself

Abstract

objectiveAdverse drug event (ADE) is a significant challenge to public health. Since data mining methods have been developed to identify signals of drug-drug interaction-induced (DDI-induced) or drug-host interaction-induced (DHI-induced) ADE from real-world data, we aim to develop a new method to detect adverse drug-drug interaction with a special awareness on patient characteristics.

methodsWe developed a trajectory-informed model (TIM) to identify signals of adverse DDI with a special awareness on patient characteristics (i.e., drug-drug-host interaction [DDHI]). We also proposed a study design based on an optimal selection of within-subject and between-subjects controls for detecting ADEs from real-world data. We analyzed a large-scale US administrative claims data and conducted a simulation study.

resultsIn administrative claims data analysis, we developed optimally matched case-control datasets for potential ADEs including acute kidney injury and gastrointestinal bleeding. We identified that an optimal selection of controls had a higher AUC compared to traditional designs for ADE detection (AUCs: 0.79-0.80 vs. 0.56-0.76). We observed that TIM detected more signals than reference methods (odds ratios: 1.13-3.18, P < 0.01), and found that 36 % of all signals generated by TIM were DDHI signals. In a simulation study, we demonstrated that TIM had an empirical false discovery rate (FDR) less than the desired value of 0.05, as well as > 1.4-fold higher probabilities of detection of DDHI signals than reference methods.

conclusionsTIM had a high probability to identify signals of adverse DDI and DDHI in a high-throughput ADE mining while controlling false positive rate. A significant portion of drug-drug combinations were associated with an increased risk of ADEs only in specific patient subpopulations. Optimal selection of within-subject and between-subjects controls could improve the performance of ADE data mining.

Indexed as

Data MiningDrug-Related Side Effects and Adverse ReactionsCase-Control StudiesComputer SimulationDrug InteractionsHumansAdverse drug eventDrug-drug-host interactionDrug-drug interactionDrug-host interactionPatient characteristics

Identifiers

PMID40456502
PMCPMC12223795

What Socratic holds

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.