Evidence map›Paper›PMID 40456760›Full record

ArticleNPJ vaccines2025

COVID-19 vaccination atlas using an integrative systems vaccinology approach.

Wasim Aluísio Prates-Syed, Dennyson Leandro Mathias da Fonseca, Shahab Zaki Pour, Aline Lira, Nelson Cortes, Jaqueline Dinis Queiroz Silva, Evelyn Carvalho, Igor Salerno Filgueiras, Tania Geraldine Churascari Vinces, Lena F Schimke and 10 more

Abstract read
In one paragraph

Article in NPJ vaccines, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Wasim Aluísio Prates-SyedInstitute of Tropical Medicine, Faculty of Medicine of the University of São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-2032-3902
Dennyson Leandro Mathias da FonsecaInstitute of Biomedical Sciences (ICB), University of São Paulo (USP), São Paulo, Brazil.ORCID http://orcid.org/0000-0003-2567-5808
Shahab Zaki PourLaboratory of Molecular Evolution and Bioinformatics, Department of Microbiology, Biomedical Sciences Institute, University of São Paulo, São Paulo, Brazil.
Aline LiraInstitute of Tropical Medicine, Faculty of Medicine of the University of São Paulo, São Paulo, Brazil.
Nelson CortesInstitute of Tropical Medicine, Faculty of Medicine of the University of São Paulo, São Paulo, Brazil.
Jaqueline Dinis Queiroz SilvaInstitute of Tropical Medicine, Faculty of Medicine of the University of São Paulo, São Paulo, Brazil.
Evelyn CarvalhoInstitute of Tropical Medicine, Faculty of Medicine of the University of São Paulo, São Paulo, Brazil.
Igor Salerno FilgueirasInstitute of Biomedical Sciences (ICB), University of São Paulo (USP), São Paulo, Brazil.ORCID http://orcid.org/0000-0002-3493-4464
Tania Geraldine Churascari VincesDepartment of Parasitology, Institute of Biomedical Sciences (ICB), University of São Paulo (USP), São Paulo, Brazil.
Lena F SchimkeInstitute of Biomedical Sciences (ICB), University of São Paulo (USP), São Paulo, Brazil.ORCID http://orcid.org/0000-0002-5616-3410
Lorena C S ChavesDepartment of Biomedical Engineering, School of Medicine, Emory University, Atlanta, Georgia, USA.ORCID http://orcid.org/0000-0001-7515-0781
Gerhard WunderlichDepartment of Parasitology, Institute of Biomedical Sciences (ICB), University of São Paulo (USP), São Paulo, Brazil.ORCID http://orcid.org/0000-0003-1724-0337
Ricardo Durães-CarvalhoSão Paulo School of Medicine, Department of Microbiology, Immunology and Parasitology, and Department of Morphology and Genetics, Federal University of São Paulo (UNIFESP), São Paulo, SP, Brazil.ORCID http://orcid.org/0000-0001-5734-7601
Haroldo Dutra DiasDepartment of Medicine, Division of Molecular Medicine, Laboratory of Medical Investigation 29, University of São Paulo School of Medicine, São Paulo, Brazil.
Hans D OchsDepartment of Pediatrics, University of Washington School of Medicine, and Seattle Children's Research Institute, Seattle, WA, USA.
Niels O S CâmaraInstitute of Biomedical Sciences (ICB), University of São Paulo (USP), São Paulo, Brazil.ORCID http://orcid.org/0000-0001-5436-1248
Helder I NakayaDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
José E KriegerLaboratory of Genetics and Molecular Cardiology, Heart Institute, Clinical Hospital, Faculty of Medicine, University of São Paulo, São Paulo, Brazil.
Otavio Cabral-Marques *Institute of Biomedical Sciences (ICB), University of São Paulo (USP), São Paulo, Brazil.ORCID http://orcid.org/0000-0002-3183-6236
Gustavo Cabral-Miranda *Institute of Tropical Medicine, Faculty of Medicine of the University of São Paulo, São Paulo, Brazil. gcabral.miranda@usp.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The COVID-19 vaccinations have played a significant role in controlling the pandemic. To elucidate their impact on the immune system, a COVID-19 vaccination atlas was developed using an integrative systems vaccinology approach. The atlas includes 562 samples from 245 participants, including both healthy individuals and those infected with or without prior vaccination, and covers the administration of five vaccines in different regimens. Key findings include the identification of distinct immune markers that differentiate between vaccine types and infection statuses. We observed that mRNA vaccines induced transient but strong immune responses after booster doses, whereas viral vector vaccines showed sustained immune activation with infection, partially resembling the immune profile exhibited during infection. Heterologous vaccination regimens demonstrated enhanced immune diversification compared to homologous regimens. Finally, we described the immunological landscape of COVID-19 vaccines and vaccines against other pathogens, at the gene-level and in cell population dynamics.

Identifiers

PMID40456760
PMCPMC12130191

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.