Evidence map›Paper›PMID 40456813›Full record

ArticleScientific data2025

A Transcriptomic Dataset of Embryonic Murine Telencephalon of Fmr1-Deficient Mice.

Sara Ebrahimiazar, Takako Kikkawa, Yohei Minakuchi, Satoshi Miyashita, Shyu Manabe, Mikio Hoshino, Atsushi Toyoda, Noriko Osumi

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sara EbrahimiazarDepartment of Developmental Neuroscience, Tohoku University Graduate School of Medicine, Sendai, Miyagi, 980-8575, Japan.ORCID http://orcid.org/0009-0007-1461-6964
Takako KikkawaDepartment of Developmental Neuroscience, Tohoku University Graduate School of Medicine, Sendai, Miyagi, 980-8575, Japan. takako.kikkawa.c4@tohoku.ac.jp.ORCID http://orcid.org/0000-0002-6643-8289
Yohei MinakuchiComparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.
Satoshi MiyashitaDepartment of Biochemistry and Cellular Biology, National Institute of Neuroscience, NCNP, Tokyo, 187-8502, Japan.ORCID http://orcid.org/0000-0003-3421-2477
Shyu ManabeDepartment of Developmental Neuroscience, Tohoku University Graduate School of Medicine, Sendai, Miyagi, 980-8575, Japan.ORCID http://orcid.org/0009-0009-4324-5722
Mikio HoshinoDepartment of Biochemistry and Cellular Biology, National Institute of Neuroscience, NCNP, Tokyo, 187-8502, Japan.ORCID http://orcid.org/0000-0002-9526-3473
Atsushi ToyodaComparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.ORCID http://orcid.org/0000-0002-0728-7548
Noriko OsumiDepartment of Developmental Neuroscience, Tohoku University Graduate School of Medicine, Sendai, Miyagi, 980-8575, Japan. noriko.osumi.c7@tohoku.ac.jp.ORCID http://orcid.org/0000-0003-0548-6452

Funding

Japan Agency for Medical Research and Development (AMED) JP21wm0425003Japan Agency for Medical Research and Development (AMED) #JP24wm0625311MEXT | Japan Society for the Promotion of Science (JSPS) #16H06279 (PAGS)MEXT | Japan Society for the Promotion of Science (JSPS) 19H03318MEXT | Japan Society for the Promotion of Science (JSPS) 24K02203
6 · The paper itself

Abstract

Fragile X syndrome (FXS) is a neurodevelopmental disorder caused by mutations in the fragile X messenger ribonucleoprotein 1 (FMR1) gene. FXS patients exhibit autistic behaviors and abnormal brain structures, with notable sex differences. However, the mechanisms by which Fmr1 deficiency leads to these sex differences during brain development remain unclear. In this study, we performed bulk RNA sequencing on telencephalon samples of Fmr1-knockout mice of both sexes at embryonic day (E) 14.5, i.e., at the peak of neurogenesis. Clustering analysis revealed gene expression differences influenced by Fmr1 gene dosage and sex. We found that majority of the transcripts were shared between male and female sample groups, while a smaller number were unique to each sex. Our dataset underscores the importance of studying brain development during the embryonic period to detect sex-dependent genetic factors which contribute to neurodevelopmental disorders.

Indexed as

Fragile X Messenger Ribonucleoprotein 1TelencephalonTranscriptomeAnimalsFemaleFragile X SyndromeMaleMiceMice, KnockoutSex CharacteristicsFmr1 protein, mouseFragile X Messenger Ribonucleoprotein 1

Identifiers

PMID40456813
PMCPMC12130245

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.