Evidence map›Paper›PMID 40461532›Full record

ArticleScientific reports2025

Cryptic absence and genetic variation of Plasmodium falciparum PfHRP2 and PfHRP3 from isolates in Papua, Indonesia.

Agatha Mia Puspitasari, Edwin Sutanto, Khilal Syauqi, Ristya Amalia, Fahira Ainun Nisa, Leily Trianty, Elizabeth Sidhartha, Enny Kenangalem, Jeanne Rini Poespoprodjo, Rukhsana Ahmed and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Agatha Mia Puspitasari *Exeins Health Initiative, Jakarta, Indonesia.
Edwin Sutanto *Exeins Health Initiative, Jakarta, Indonesia.
Khilal SyauqiIndonesia International Institute of Life Sciences, Jakarta, Indonesia.
Ristya AmaliaExeins Health Initiative, Jakarta, Indonesia.
Fahira Ainun NisaExeins Health Initiative, Jakarta, Indonesia.
Leily TriantyEijkman Research Center for Molecular Biology-BRIN, Cibinong, Indonesia.
Elizabeth SidharthaIndonesia International Institute of Life Sciences, Jakarta, Indonesia.
Enny KenangalemPapuan Community Health and Development Foundation, Timika, Papua, Indonesia.
Jeanne Rini PoespoprodjoPapuan Community Health and Development Foundation, Timika, Papua, Indonesia.
Rukhsana AhmedExeins Health Initiative, Jakarta, Indonesia.
Ewurama OwusuFoundation for Innovative New Diagnostics (FIND), Geneva, Switzerland.
Lise CarlierFoundation for Innovative New Diagnostics (FIND), Geneva, Switzerland.
Kevin K A TettehFoundation for Innovative New Diagnostics (FIND), Geneva, Switzerland.
Qin ChengDrug Resistance and Diagnostics, Australian Defence Force Malaria and Infectious Disease Institute, Brisbane, Australia.
Rintis NoviyantiEijkman Research Center for Molecular Biology-BRIN, Cibinong, Indonesia. rnoviyanti2@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rising prevalence of histidine-rich protein 2 (PfHRP2) gene deletions (pfhrp2-) poses a threat to the accuracy of PfHRP2-based rapid diagnostic tests (RDTs). However, evidence of this deletion is scarce in Indonesia. We examined the prevalence of pfhrp2 and its paralogue histidine-rich protein 3 (PfHRP3) gene deletions (pfhrp3-) in blood samples collected from a study assessing three PfHRP2-based RDTs conducted between December 2022 and April 2023 in Timika, Papua. Out of 2157 symptomatic-patients enrolled, 566 P. falciparum mono-infection cases were included for pfhrp2/3 exon 2 genotyping. We detected nine samples (1.59%, 95% CI 0.73-3.00%) with pfhrp2-/pfhrp3-, of which eight were PfHRP2-RDTs positive. Of three pfhrp2- samples (0.53%, 95% CI 0.11-1.54%), one was PfHRP2-RDTs positive. In contrast, 201 samples (35.51%, 95% CI 31.57-39.61%) had pfhrp3-, five of which were pfhrp2 + but PfHRP2-RDT negative; however, four exhibited low parasitemia. Five PfHRP2-RDTs negative samples with pfhrp2 + /pfhrp3 + were sequenced alongside two pfhrp2 + with PfHRP2-RDTs positive samples. We found more repeat-type variations in pfhrp2 compared to pfhrp3. Seven unique repeat types in pfhrp2 and one unique repeat type in pfhrp3 amino acid sequences were characterized in single or multiple copies per sample. These results demonstrated the low prevalence of pfhrp2- 2.12% (95% CI 1.10-3.67%) suggesting PfHRP2-based RDTs remain suitable for malaria diagnosis in Timika, Papua, Indonesia.

Indexed as

Antigens, ProtozoanGenetic VariationMalaria, FalciparumPlasmodium falciparumProtozoan ProteinsAdolescentAdultChildChild, PreschoolFemaleGene DeletionGenotypeHumansIndonesiaMaleAntigens, ProtozoanHRP-2 antigen, Plasmodium falciparumHRP3 protein, Plasmodium falciparumProtozoan ProteinsIndonesiaPapuapfhrp2pfhrp3Plasmodium falciparumRDTSequence variation

Identifiers

PMID40461532
PMCPMC12134276

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.