Evidence map›Paper›PMID 40463082›Full record

ArticlebioRxiv : the preprint server for biology2025

Probing the Ca

Aaron Rodriques, Guoxia Liu, Alex Katchman, Sergey Zakharov, Elaine Wan, Marian Kalocsay, Robyn Eisert, Gary A Bradshaw, Bi-Xing Chen, Lin Yang and 8 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Aaron RodriquesDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Guoxia LiuDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.ORCID 0000-0003-1132-2905
Alex KatchmanDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.ORCID 0000-0003-1563-8827
Sergey ZakharovDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Elaine WanDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.ORCID 0000-0002-5328-7282
Marian KalocsayDepartment of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Robyn EisertLaboratory of Systems Pharmacology, Program in Therapeutic Science, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-7977-249X
Gary A BradshawLaboratory of Systems Pharmacology, Program in Therapeutic Science, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-9724-6100
Bi-Xing ChenDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Lin YangDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Steven ReikenDepartment of Cellular Physiology and Biophysics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.ORCID 0000-0002-5807-3574
Xianghai LaiDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.
Ruiping JiDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Najla SaadallahDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Veli TopkaraDepartment of Medicine, University of Wisconsin School of Medicine, Milwaukee, WI, USA.ORCID 0000-0002-2236-2008
Stavros FanourakisDepartment of Cellular Physiology and Biophysics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Qi YuanDepartment of Cellular Physiology and Biophysics, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Jared KushnerDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.ORCID 0000-0003-4821-0990

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Training in Cardiovascular Translational ResearchT32HL120826 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARKS, ANDREW ROBERT, TABAS, IRA A · 2014 to 2023
$4.7M
Role of RNA helicase Ddx5 in pathological cardiac remodelingR01HL170132 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Veli Kemal Topkara · 2023 to 2026
$2.1M
Understanding the role of mitochondrial dysfunction in cardiac arrhythmias using a novel 3D panoramic optical mapping systemR01HL152236 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WAN, ELAINE Y · 2020 to 2024
$2.0M
Regulators and interactomes of CaV1.2 in health and diseaseK08HL151969 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KUSHNER, JARED S · 2021 to 2025
$827k
NCI NIH HHS P30 CA013696NHLBI NIH HHS K08 HL151969NHLBI NIH HHS R01 HL152236NHLBI NIH HHS R01 HL170132NHLBI NIH HHS T32 HL120826
6 · The paper itself

Abstract

Background: Maladaptive changes in the function, expression and localization of proteins involved in calcium-handling worsen the impaired contractility of systolic heart failure (HF). Standard proteomics techniques require cell lysis and so are unable to characterize changes specific to the critical subcellular domain bounded by the T-tubule and the sarcoplasmic reticulum, known as the cardiac dyad. Traditional approaches are also less likely to capture low-affinity protein-protein interactions on lipid membranes. To improve our understanding of heart failure pathophysiology, we applied proximity proteomics to the cardiac dyad of mice with ischemic cardiomyopathy. Methods: Using two lines of transgenic mice expressing fusion proteins of the engineered ascorbate peroxidase APEX2 with subunits of the cardiac voltage gated calcium channel, Ca Results: From mice with HF, we found significant enrichment of 43 proteins defined by their abundance and proximity to transgenic Ca Conclusions: Using proximity proteomics to examine the effects of HF

Identifiers

PMID40463082
PMCPMC12132424

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.