Evidence map›Paper›PMID 40466418›Full record

ArticleMicrobiological research2025

Role of R5 pyocin in the predominance of high-risk Pseudomonas aeruginosa isolates.

Liyang Zhang, Qi Xu, Filemon C Tan, Meggie Wang, Yanhan Deng, Morgan Hakki, Samuel A Shelburne, Natalia V Kirienko

Abstract read
In one paragraph

Article in Microbiological research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Beyond the Usual Suspects: EmergingInternational journal of molecular sciences · 2026
    Review
  2. R pyocin sensitivity ofJournal of medical microbiology · 2026
    Article
  3. Lipopolysaccharide-targeting treatments for multidrug-resistantExpert opinion on therapeutic targets · 2026
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Liyang ZhangDepartment of BioSciences, Rice University, Houston, TX, United States.
Qi XuDepartment of BioSciences, Rice University, Houston, TX, United States; Department of Bioengineering, Rice University, Houston, TX, United States.
Filemon C TanDepartment of BioSciences, Rice University, Houston, TX, United States.
Meggie WangDepartment of BioSciences, Rice University, Houston, TX, United States.
Yanhan DengDepartment of BioSciences, Rice University, Houston, TX, United States.
Morgan HakkiDivision of Infectious Diseases, Department of Medicine, Oregon Health and Science University, Portland, OR, United States.
Samuel A ShelburneDepartments of Infectious Diseases and Genomic Medicine, MD Anderson Cancer Center, Houston, TX, United States.
Natalia V KirienkoDepartment of BioSciences, Rice University, Houston, TX, United States. Electronic address: kirienko@rice.edu.

Funding

Molecular mechanisms for clinical dominance of P. aeruginosa ST111 isolatesR21AI176089 · NIAID · RICE UNIVERSITY · PI KIRIENKO, NATASHA · 2024 to 2025
$414k
NIAID NIH HHS R21 AI176089
6 · The paper itself

Abstract

Infections with antimicrobial-resistant pathogens, such as Pseudomonas aeruginosa, are a frequent occurrence in healthcare settings. Although human P. aeruginosa infections are predominantly caused by a small number of sequence types (ST), such as ST235 and ST111, that are frequently multidrug-resistant, the basis for this dominance remains unclear. Using a genome-wide, transposon-insertion library screen, we discovered that the production of R5 pyocins (one of 5 subtypes of R pyocins) confers a competitive advantage to ST111 strains. Competitive dominance was lost by mutants lacking R pyocin production. Analysis of 5135 P. aeruginosa strains revealed that several international, high-risk sequence types (including ST235 and ST111) are enriched for R5 pyocin production, indicating a correlation between R5 pyocin production and clinical dominance, suggesting a novel approach for evaluating risk from emerging P. aeruginosa strains. An ST235 strain also lost its competitive advantage after deletion of an R5 pyocin structural gene, corroborating these findings. Overall, our study sheds light onto mechanisms underlying predominance of particular clades of antimicrobial resistant bacteria.

Indexed as

Pseudomonas aeruginosaPyocinsAnti-Bacterial AgentsDNA Transposable ElementsDrug Resistance, Multiple, BacterialGenome, BacterialHumansMicrobial Sensitivity TestsPseudomonas InfectionsAnti-Bacterial AgentsDNA Transposable ElementsPyocinsHigh-risk sequence typesIntraspecies competitionP. aeruginosaR pyocin

Identifiers

PMID40466418
PMCPMC12422788

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.