Evidence map›Paper›PMID 40489553›Full record

ArticlePLoS biology2025

Species-wide gene editing of a flowering regulator reveals hidden phenotypic variation.

Ulrich Lutz, Ilja Bezrukov, Rebecca Schwab, Wei Yuan, Marius Kollmar, Detlef Weigel

Abstract read
In one paragraph

Article in PLoS biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ulrich LutzDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID 0000-0003-3625-3440
Ilja BezrukovDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
Rebecca SchwabDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
Wei YuanDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
Marius KollmarDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
Detlef WeigelDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID 0000-0002-2114-7963

Funding

Max Planck SocietyNovo Nordisk Foundation
6 · The paper itself

Abstract

Genes do not act in isolation, and the effects of a specific variant at one locus can often be greatly modified by polymorphic variants at other loci. A good example is FLOWERING LOCUS C (FLC), which has been inferred to explain much of the flowering time variation in Arabidopsis thaliana. We use a set of 62 flc species-wide mutants to document pleiotropic, genotype-dependent effects for FLC on flowering as well as several other traits. Time to flowering was greatly reduced in all mutants, with the remaining variation explained mainly by allelic variation at the FLC target FT. Analysis of FT sequence variation suggested that extremely early combinations of FLC and FT alleles should exist in the wild, which we confirmed by targeted collections. Our study provides a proof of concept on how pan-genetic analysis of hub genes can reveal the true extent of genetic networks in a species.

Indexed as

FlowersGene EditingGene Expression Regulation, PlantAllelesArabidopsisArabidopsis ProteinsGene ExpressionGene Regulatory NetworksMADS Domain ProteinsMutationPhylogenyArabidopsis ProteinsAt5g10140 protein, ArabidopsisMADS Domain Proteins

Identifiers

PMID40489553
PMCPMC12185000

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.