Evidence map›Paper›PMID 40493670›Full record

ArticlePLoS computational biology2025

F-BIAS: Towards a distributed national core facility for bioimage analysis.

Mélodie Ambroset, Anselmet Marie, Benedetti Clément, Meslin Arthur, Maillot Aurélien, Rouvière Christian, Maucort Guillaume, Breuilly Marine, Albert Marvin, Letort Gaëlle and 11 more

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Mélodie AmbrosetNantes Université, CHU Nantes, CNRS, INSERM, BioCore, US16, SFR Bonamy, Nantes, France.ORCID 0000-0001-8071-836X
Anselmet MarieInstitut Pasteur, Université Paris Cité, Image Analysis Hub (IAH), Paris, France.
Benedetti ClémentMontpellier Ressources Imagerie, BioCampus, University of Montpellier, CNRS, INSERM, UAR 3426, US 09 INSERM, Montpellier, France.
Meslin ArthurInstitut Curie, Cell and Tissue Imaging Facility (PICT-IBiSA), Cell Biology and Cancer, PSL Research University, CNRS UMR 144, Paris, France.
Maillot AurélienInstitut Curie, Cell and Tissue Imaging Facility (PICT-IBiSA), Genetics and Developmental Biology, CNRS UMR 3215, INSERM U934, Sorbonne Université, Paris, France.ORCID 0000-0001-9818-3287
Rouvière ChristianCBI Image Processing, Centre de Biologie Integrative, Université de Toulouse, CNRS, Toulouse, France.
Maucort GuillaumeUniversity of Bordeaux, France-BioImaging INBS, Bordeaux Imaging Center (BIC), CNRS, INSERM, UMS 3420, US 24, Bordeaux, France.
Breuilly MarineCIQLE, LyMIC, LABEX CORTEX, Université Claude Bernard Lyon 1, Structure Fédérative de Recherche santé Lyon-Est CNRS UAR 3453, INSERM, US 07, Lyon, France.ORCID 0000-0001-6432-7182
Albert MarvinInstitut Pasteur, Université Paris Cité, Image Analysis Hub (IAH), Paris, France.
Letort GaëlleDepartment of Developmental and Stem Cell Biology, Institut Pasteur, Université de Paris Cité, CNRS UMR 3738, Paris, France.ORCID 0000-0002-5866-0322
Trullo AntonioInstitut de Génétique Moléculaire de Montpellier, University of Montpellier, CNRS, UMR 5535, Montpellier, France.
Bäcker VolkerMontpellier Ressources Imagerie, BioCampus, University of Montpellier, CNRS, INSERM, UAR 3426, US 09 INSERM, Montpellier, France.ORCID 0000-0002-9129-6403
Mutterer JérômeInstitut de biologie moléculaire des plantes, CNRS, UPR 2357, Université de Strasbourg, Strasbourg, France.
Cordelières FabriceUniversity of Bordeaux, France-BioImaging INBS, Bordeaux Imaging Center (BIC), CNRS, INSERM, UMS 3420, US 24, Bordeaux, France.ORCID 0000-0002-5383-5816
Pécot ThierryFacility for Artificial Intelligence and Image Analysis (FAIIA), Biosit, UAR 3480, CNRS, INSERM, US 18, Rennes University, Rennes, France.
Phan Minh-SonInstitut Pasteur, Université Paris Cité, Image Analysis Hub (IAH), Paris, France.ORCID 0000-0002-9916-1351
Rigaud StéphaneInstitut Pasteur, Université Paris Cité, Image Analysis Hub (IAH), Paris, France.ORCID 0000-0003-2161-0927
Feyeux MagaliNantes Université, CHU Nantes, CNRS, INSERM, BioCore, US16, SFR Bonamy, Nantes, France.
Paul-Gilloteaux PerrineNantes Université, CHU Nantes, CNRS, INSERM, BioCore, US16, SFR Bonamy, Nantes, France.ORCID 0000-0002-4822-165X
Macé Anne-SophieInstitut Curie, Cell and Tissue Imaging Facility (PICT-IBiSA), Cell Biology and Cancer, PSL Research University, CNRS UMR 144, Paris, France.
Tinevez Jean-YvesInstitut Pasteur, Université Paris Cité, Image Analysis Hub (IAH), Paris, France.ORCID 0000-0002-0998-4718

Funding

Agence Nationale de la Recherche
6 · The paper itself

Abstract

We discuss in this article the creation and organization of a national core facility for bioimage analysis, based on a distributed team. F-BIAS federates bioimage analysts across France and relies on them to deliver services to the researchers of this territory. The main challenge in implementing this structure is to ensure significant scientific value to the analysts, thereby encouraging their active participation and persuading their respective host teams to support their involvement. F-BIAS accomplished this by creating a professional network that mitigates the negative effects of isolation experienced by its members, who are often the sole bioimage analyst within their local teams, and fosters the development of their technical skills. In a second phase we capitalized on F-BIAS to create a virtual, remotely-operating core facility for bioimage analysis, offering consultations and collaborative project services to the scientific community of France. The services are organized so that they also contribute to the technical proficiency of the analysts. To promote the creation of similar structures, we present and discuss here the organization of this nationally distributed bioimage analysis service core, highlighting successes and challenges.

Indexed as

Computational BiologyImage Processing, Computer-AssistedFranceHumans

Identifiers

PMID40493670
PMCPMC12151432

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.