Evidence map›Paper›PMID 40497521›Full record

ArticleHuman brain mapping2025

ComBatLS: A Location- and Scale-Preserving Method for Multi-Site Image Harmonization.

Margaret Gardner, Russell T Shinohara, Richard A I Bethlehem, Rafael Romero-Garcia, Varun Warrier, Lena Dorfschmidt, Lifespan Brain Chart Consortium, Sheila Shanmugan, Paul Thompson, Jakob Seidlitz and 2 more

Abstract read
In one paragraph

Article in Human brain mapping, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  8. Calibration of MRI-based reference intervals to new samples.bioRxiv : the preprint server for biology · 2025
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  15. Elucidation of Brain Morphogenesis Using Quantitative Brain Magnetic Resonance Imaging in Children.Pediatrics international : official journal of the Japan Pediatric Society
    Review
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Margaret GardnerBrain-Gene-Development Lab, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, Pennsylvania, USA.ORCID 0000-0002-4498-0827
Russell T ShinoharaPenn Statistics in Imaging and Visualization Center, Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Richard A I BethlehemDepartment of Psychology, University of Cambridge, Cambridge, UK.
Rafael Romero-GarciaInstituto de Biomedicina de Sevilla (IBiS) HUVR/CSIC/Universidad de Sevilla/CIBERSAM, ISCIII, Dpto de Fisiología Médica y Biofísica, Barcelona, Spain.ORCID 0000-0002-5199-4573
Varun WarrierDepartment of Psychology, University of Cambridge, Cambridge, UK.
Lena DorfschmidtBrain-Gene-Development Lab, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, Pennsylvania, USA.
Lifespan Brain Chart Consortium
Sheila ShanmuganLifespan Brain Institute, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, Pennsylvania, USA.
Paul ThompsonImaging Genetics Center, Stevens Institute for Neuroimaging & Informatics, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Jakob SeidlitzBrain-Gene-Development Lab, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, Pennsylvania, USA.
Aaron F Alexander-BlochBrain-Gene-Development Lab, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, Pennsylvania, USA.
Andrew A ChenDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, South Carolina, USA.

Funding

The VETSA Longitudinal Twin Study of Cognition and Aging (VETSA 4)R01AG050595 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELMAN, JEREMY A, FRANZ, CAROL ELAINE · 2015 to 2024
$28.0M
The VETSA Longitudinal MRI Twin Study of Aging (VETSA MRI 4)R01AG076838 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ANDERS M DALE, Jeremy A Elman · 2022 to 2026
$8.7M
Statistical Methods for Multilevel Multivariate Functional StudiesR01NS060910 · NINDS · JOHNS HOPKINS UNIVERSITY · PI Ciprian M Crainiceanu · 2009 to 2026
$8.3M
Inter-modal Coupling Image AnalyticsR01MH112847 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI Theodore Satterthwaite, Russell Takeshi Shinohara · 2017 to 2026
$5.9M
The Genetics of Personalized Functional MRI NetworksR01MH132934 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI Aaron Felix Alexander-Bloch · 2023 to 2026
$4.2M
Harmonization of Multi-Site Neuroimaging Data from Complex Study DesignsR01MH123550 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI SHINOHARA, RUSSELL TAKESHI · 2020 to 2025
$4.0M
The Neuroimaging Brain Chart Software SuiteU24NS130411 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Christos Davatzikos, Yong Fan · 2023 to 2026
$3.7M
Precision brain charts for imaging-genomics of schizophrenia and the psychosis spectrumR01MH133843 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI Aaron Felix Alexander-Bloch · 2023 to 2026
$3.2M
Advanced Statistical Analytics of MRI in MSR01NS112274 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI SHINOHARA, RUSSELL TAKESHI · 2020 to 2024
$2.8M
Radiomics for Clinically-Acquired Brain MRIs of Youth with Neurodevelopmental DisordersR01MH134896 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI Aaron Felix Alexander-Bloch · 2024 to 2026
$2.3M
Semiparametric Inference for Psychiatric NeuroimagingR01MH123563 · NIMH · VANDERBILT UNIVERSITY MEDICAL CENTER · PI VANDEKAR, SIMON NEIL · 2020 to 2024
$2.1M
Using person-specific networks to uncover sex differences in vulnerability to internalizing disordersDP5OD036142 · OD · UNIVERSITY OF PENNSYLVANIA · PI Sheila Shanmugan · 2023 to 2026
$2.0M
Agencia Estatal de Investigación CNS2023-143647Agencia Estatal de Investigación PID2021-122853OA-I00Brain and Behavior Research FoundationBurroughs Wellcome FundEMERGIA Junta de Andalucía EMERGIA20_00139FOCUS on Health and Leadership for Women and Penn PROMOTES Research on Sex and Gender in HealthNIA NIH HHS R01 AG050595NIA NIH HHS R01 AG076838NIH HHS DP5 OD036142NIH HHS DP5OD036142NIH HHS R01MH112847NIH HHS R01MH123550NIH HHS R01MH123563NIH HHS R01MH132934NIH HHS R01MH133843NIH HHS R01MH134896NIH HHS R01NS060910NIH HHS R01NS112274NIMH NIH HHS R01 MH112847NIMH NIH HHS R01 MH123550NIMH NIH HHS R01 MH123563NIMH NIH HHS R01 MH132934NIMH NIH HHS R01 MH133843NIMH NIH HHS R01 MH134896NINDS NIH HHS R01 NS060910NINDS NIH HHS R01 NS112274NINDS NIH HHS U24 NS130411
6 · The paper itself

Abstract

Recent study has leveraged massive datasets and advanced harmonization methods to construct normative models of neuroanatomical features and benchmark individuals' morphology. However, current harmonization tools do not preserve the effects of biological covariates including sex and age on features' variances; this failure may induce error in normative scores, particularly when such factors are distributed unequally across sites. Here, we introduce a new extension of the popular ComBat harmonization method, ComBatLS, that preserves biological variance in features' locations and scales. We use UK Biobank data to show that ComBatLS robustly replicates individuals' normative scores better than other ComBat methods when subjects are assigned to sex-imbalanced synthetic "sites." Additionally, we demonstrate that ComBatLS significantly reduces sex biases in normative scores compared to traditional methods. Finally, we show that ComBatLS successfully harmonizes consortium data collected across over 50 studies. R implementation of ComBatLS is available at https://github.com/andy1764/ComBatFamily.

Indexed as

BrainImage Processing, Computer-AssistedMagnetic Resonance ImagingNeuroimagingAdultFemaleHumansMaleMiddle Aged

Identifiers

PMID40497521
PMCPMC12152769

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.