Evidence map›Paper›PMID 40497739›Full record

ArticleJournal of bacteriology2025

Functional consequences of genetic variations in DgoR, a GntR/FadR family transcriptional repressor of D-galactonate metabolism in

Swati Singh, Rajesh Mishra, Richa Ashok Kakkar, Shivam Singla, Akhil Pratap, Gaurav Sharma, Monika Sharma, Rachna Chaba

Abstract read
In one paragraph

Article in Journal of bacteriology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Swati SinghDepartment of Biological Sciences, Indian Institute of Science Education and Research, Mohali, Punjab, India.ORCID 0009-0008-8822-0994
Rajesh MishraDepartment of Biological Sciences, Indian Institute of Science Education and Research, Mohali, Punjab, India.
Richa Ashok KakkarDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Sangareddy, Telangana, India.ORCID 0009-0004-9193-2440
Shivam SinglaDepartment of Biological Sciences, Indian Institute of Science Education and Research, Mohali, Punjab, India.ORCID 0009-0009-4729-8995
Akhil PratapBiological Systems Engineering, Plaksha University, Mohali, Punjab, India.
Gaurav SharmaDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Sangareddy, Telangana, India.ORCID 0000-0002-2861-7446
Monika SharmaBiological Systems Engineering, Plaksha University, Mohali, Punjab, India.ORCID 0000-0001-9864-3298
Rachna ChabaDepartment of Biological Sciences, Indian Institute of Science Education and Research, Mohali, Punjab, India.ORCID 0000-0002-9156-4543

Funding

Department of Biotechnology, Ministry of Science and Technology, India BT/PR34553/BRB/10/1846/2020Department of Science and Technology, Ministry of Science and Technology, India INSPIRE Faculty AwardMinistry of Education, India MoE-STARS/STARS-1/296Science and Engineering Research Board CRG/2018/000833Science and Engineering Research Board SB/SRS/2019-20/23/CS,SPG/2021/002604Wellcome TrustWellcome Trust DBT India Alliance IA/S/21/2/505907
6 · The paper itself

Abstract

Genetic variations in transcriptional regulators (TRs) of metabolic loci can influence host-bacterial interactions by affecting carbon utilization. Although the metabolism of sugar acids, including D-galactonate, is extensively implicated in the colonization and virulence of enteric bacteria, there has been no investigation on the extent of variations in their pathway-specific TRs. DgoR, the TR of D-galactonate metabolism, is the best-characterized GntR/FadR family sugar acid TR in enteric bacteria, recognized by the presence of an N-terminal winged helix-turn-helix DNA-binding domain and a C-terminal effector-binding and oligomerization (E-O) domain connected by a linker. Here, we examined 340

Indexed as

Bacterial ProteinsEscherichia coliEscherichia coli ProteinsGenetic VariationRepressor ProteinsSugar AcidsGene Expression Regulation, BacterialBacterial ProteinsEscherichia coli Proteinsgalactonic acidRepressor ProteinsSugar Acidscarbohydrate metabolismeffectorgene regulationligandsugar acidtranscription factors

Identifiers

PMID40497739
PMCPMC12288454

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.