Evidence map›Paper›PMID 40501784›Full record

ArticlebioRxiv : the preprint server for biology2025

Integrated analysis of COVID-19 multi-omics data for eQTLs reveals genetic mechanisms underlying disease severity.

Jeongha Lee, Eun Young Jeon, Liyang Yu, Hye-Yeong Jo, Sang Cheol Kim, Woong-Yang Park, Hyun-Young Park, Siming Zhao, Murim Choi

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jeongha LeeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Republic of Korea.
Eun Young JeonDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Republic of Korea.
Liyang YuDepartment of Biomedical Data Science, Dartmouth Cancer Center, Dartmouth College, Hanover, NH, USA.
Hye-Yeong JoDivision of Healthcare and Artificial Intelligence, Department of Precision Medicine, Korea National Institute of Health, Korea Disease Control and Prevention Agency, Cheongju, Republic of Korea.
Sang Cheol KimDivision of Healthcare and Artificial Intelligence, Department of Precision Medicine, Korea National Institute of Health, Korea Disease Control and Prevention Agency, Cheongju, Republic of Korea.
Woong-Yang ParkSamsung Genome Institute, Samsung Medical Center, Seoul 06351, Republic of Korea.
Hyun-Young ParkKorea National Institute of Health, Korea Disease Control and Prevention Agency, Cheongju, Republic of Korea.
Siming ZhaoDepartment of Biomedical Data Science, Dartmouth Cancer Center, Dartmouth College, Hanover, NH, USA.
Murim ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Republic of Korea.ORCID 0000-0002-9195-1455

Funding

Zhao - Proj 2P20GM130454 · NIGMS · DARTMOUTH COLLEGE · PI Li Song · 2019 to 2026
$27.2M
Statistical methods and analyses to study genetic variants and their roles in diseases leveraging functional genomics data.R35GM154925 · NIGMS · DARTMOUTH COLLEGE · PI Siming Zhao · 2024 to 2026
$1.2M
NIGMS NIH HHS P20 GM130454NIGMS NIH HHS R35 GM154925
6 · The paper itself

Abstract

The global pandemic caused by the SARS-CoV-2 virus provided an unprecedented opportunity to investigate genetic factors influencing the disease severity of the viral infection. Despite a plethora of recent research on both SARS-CoV-2 and COVID-19, few have taken a systems biology approach to address individual-level variation, especially based on non-European populations. Accordingly, we analyzed multi-omics data generated at three timepoints from 193 Korean COVID-19 patients with mild or severe symptoms, composed of whole genome sequencing, blood-based single-cell RNA-sequencing (2.15M cells), 195 cytokine profiles, and human leukocyte antigen (HLA) allele data. We identified expression quantitative trait loci (eQTLs), disease severity interacting eQTLs (

Identifiers

PMID40501784
PMCPMC12154971

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.