Evidence map›Paper›PMID 40512671›Full record

ArticleBiomacromolecules2025

Impact of Molecular Crowding on Accessibility of Telomeric Overhangs Forming Multiple G-Quadruplexes.

Golam Mustafa, Sajad Shiekh, Janan Alfehaid, Sineth G Kodikara, Hamza Balci

Abstract read
In one paragraph

Article in Biomacromolecules, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Golam MustafaDepartment of Physics, Kent State University, Kent, Ohio 44242, United States.
Sajad ShiekhDepartment of Physics, Kent State University, Kent, Ohio 44242, United States.
Janan AlfehaidDepartment of Physics, Kent State University, Kent, Ohio 44242, United States.
Sineth G KodikaraDepartment of Physics, Kent State University, Kent, Ohio 44242, United States.
Hamza BalciDepartment of Physics, Kent State University, Kent, Ohio 44242, United States.ORCID 0000-0002-0273-4871

Funding

Structure, Accessibility and Extension of Telomeric Overhangs-Supplement for a Confocal MicroscopeR35GM156183 · NIGMS · KENT STATE UNIVERSITY · PI Hamza Balci · 2025 to 2026
$1.1M
Targeting Promoter G-quadruplexes with CRISPR-dCas9 for Transcription RegulationR15GM146180 · NIGMS · KENT STATE UNIVERSITY · PI BALCI, HAMZA · 2022 to 2023
$539k
NIGMS NIH HHS R15 GM146180NIGMS NIH HHS R35 GM156183
6 · The paper itself

Abstract

Molecular crowding─a defining feature of the cellular environment─affects folding kinetics, conformation, and stability of G-quadruplex (GQ) structures. However, its influence on the overall architecture and accessibility of telomeric overhangs containing multiple GQs remains largely unexplored. In this study, we employed single-molecule FRET and FRET-PAINT to address this question. We examined the accessibility of telomeric overhangs, capable of forming 1-6 GQs, to a short complementary peptide nucleic acid (PNA) imager probe in the presence of 200 and 6000 Da polyethylene glycol (PEG) molecules (PEG-200 and PEG-6000). We observed a progressive compaction and architectural condensation of the overhang as PEG concentration increased. At 30% concentration, this compaction was accompanied by approximately 3-fold and 8-fold reduction in probe accessibility in PEG-200 and PEG-6000, respectively. These findings offer new insights into how the crowded cellular environment may compact telomeric overhangs and modulate their structural and functional properties.

Indexed as

G-QuadruplexesPeptide Nucleic AcidsPolyethylene GlycolsTelomereFluorescence Resonance Energy TransferHumansPeptide Nucleic AcidsPolyethylene Glycols

Identifiers

PMID40512671
PMCPMC12266048

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.