Evidence map›Paper›PMID 40515984›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Activity-Based Protein Profiling of Serine Hydrolases in Bacteria: Methods and Protocols.

Md Jalal Uddin, Jeanette S Grunnvåg, Christian S Lentz

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Md Jalal Uddin *Department of Medical Biology and Centre for New Antibacterial Strategies (CANS), UiT The Arctic University of Norway, Tromsø, Norway.
Jeanette S Grunnvåg *Department of Medical Biology and Centre for New Antibacterial Strategies (CANS), UiT The Arctic University of Norway, Tromsø, Norway.
Christian S LentzDepartment of Medical Biology and Centre for New Antibacterial Strategies (CANS), UiT The Arctic University of Norway, Tromsø, Norway. christian.s.lentz@uit.no.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activity-based protein profiling (ABPP) is a chemoproteomic technique that uses functionalized covalent enzyme inhibitors known as activity-based probes (ABPs) to detect, quantify, and identify active enzymes in a biological sample. Here, we describe experimental protocols for profiling of enzyme activities in bacterial cultures using both fluorescent and biotinylated ABPs that allow for the gel-based detection and resolution of target enzymes, or their enrichment and mass spectrometry-based identification, respectively. These protocols have been optimized for profiling of serine hydrolases using fluorophosphonate probes in both Gram-positive and Gram-negative bacteria, and they can easily be adapted for the application of probes targeting other enzyme families of interest in bacteria under diverse growth conditions.

Indexed as

BacteriaBacterial ProteinsHydrolasesProteomicsMass SpectrometryBacterial ProteinsHydrolasesActivity-based probeBacteriaChemoproteomicsFlurorophosphonateSerine hydrolases

Identifiers

PMID40515984

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.