Evidence map›Paper›PMID 40516947›Full record

ArticleSaudi medical journal2025

Identification of genetic variants in patients with primary and secondary amenorrhea.

Flora Bai, Renjini Nambiar, Chirayu Padhiar, Wilson Aruni, Chinnadurai Veeramani, Mohammed A Alsaif, Khalid S Al-Numair

Abstract read
In one paragraph

Article in Saudi medical journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Flora BaiFrom the Department of Biotechnology (Bai), Sathyabama Institute of Science and Technology, Chennai; from the Cytogenetics Department (Bai, Nambiar) and Department of Biologics (Padhiar), LifeCell International Private Ltd, Chennai; from the Department of Biotechnology (Aruni), Amity University, Mumbai, India; from the Department of Community Health Sciences (Veeramani, Alsaif, Al-Numair), College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia; and from the Musculoskeletal Disease Research Centre (Aruni), Loma Linda Veterans Affairs, United States of America.
Renjini NambiarFrom the Department of Biotechnology (Bai), Sathyabama Institute of Science and Technology, Chennai; from the Cytogenetics Department (Bai, Nambiar) and Department of Biologics (Padhiar), LifeCell International Private Ltd, Chennai; from the Department of Biotechnology (Aruni), Amity University, Mumbai, India; from the Department of Community Health Sciences (Veeramani, Alsaif, Al-Numair), College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia; and from the Musculoskeletal Disease Research Centre (Aruni), Loma Linda Veterans Affairs, United States of America.
Chirayu PadhiarFrom the Department of Biotechnology (Bai), Sathyabama Institute of Science and Technology, Chennai; from the Cytogenetics Department (Bai, Nambiar) and Department of Biologics (Padhiar), LifeCell International Private Ltd, Chennai; from the Department of Biotechnology (Aruni), Amity University, Mumbai, India; from the Department of Community Health Sciences (Veeramani, Alsaif, Al-Numair), College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia; and from the Musculoskeletal Disease Research Centre (Aruni), Loma Linda Veterans Affairs, United States of America.
Wilson AruniFrom the Department of Biotechnology (Bai), Sathyabama Institute of Science and Technology, Chennai; from the Cytogenetics Department (Bai, Nambiar) and Department of Biologics (Padhiar), LifeCell International Private Ltd, Chennai; from the Department of Biotechnology (Aruni), Amity University, Mumbai, India; from the Department of Community Health Sciences (Veeramani, Alsaif, Al-Numair), College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia; and from the Musculoskeletal Disease Research Centre (Aruni), Loma Linda Veterans Affairs, United States of America.ORCID https://orcid.org/0000-0002-9208-0153
Chinnadurai VeeramaniFrom the Department of Biotechnology (Bai), Sathyabama Institute of Science and Technology, Chennai; from the Cytogenetics Department (Bai, Nambiar) and Department of Biologics (Padhiar), LifeCell International Private Ltd, Chennai; from the Department of Biotechnology (Aruni), Amity University, Mumbai, India; from the Department of Community Health Sciences (Veeramani, Alsaif, Al-Numair), College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia; and from the Musculoskeletal Disease Research Centre (Aruni), Loma Linda Veterans Affairs, United States of America.
Mohammed A AlsaifFrom the Department of Biotechnology (Bai), Sathyabama Institute of Science and Technology, Chennai; from the Cytogenetics Department (Bai, Nambiar) and Department of Biologics (Padhiar), LifeCell International Private Ltd, Chennai; from the Department of Biotechnology (Aruni), Amity University, Mumbai, India; from the Department of Community Health Sciences (Veeramani, Alsaif, Al-Numair), College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia; and from the Musculoskeletal Disease Research Centre (Aruni), Loma Linda Veterans Affairs, United States of America.
Khalid S Al-NumairFrom the Department of Biotechnology (Bai), Sathyabama Institute of Science and Technology, Chennai; from the Cytogenetics Department (Bai, Nambiar) and Department of Biologics (Padhiar), LifeCell International Private Ltd, Chennai; from the Department of Biotechnology (Aruni), Amity University, Mumbai, India; from the Department of Community Health Sciences (Veeramani, Alsaif, Al-Numair), College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia; and from the Musculoskeletal Disease Research Centre (Aruni), Loma Linda Veterans Affairs, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesTo identify the cytogenetic and molecular pattern abnormalities and early diagnose the cause of primary and secondary amenorrhea.

methodsA total of 320 patients in the age group of 14-35 years with clinically confirmed amenorrhea were screened using conventional cytogenetic methods. Patients with a normal karyotype, hypoplastic uterus, and no hormonal imbalance were extensively investigated using molecular cytogenetic platforms such as chromosomal microarrays and clinical exome sequencing (CES).

resultsOf the 266 patients with primary amenorrhea and 54 with secondary amenorrhea, 66.9% and 88.9%, independently, had a normal karyotype. The 20 patients with a normal karyotype, hypoplastic uterus, and no hormonal imbalance were further evaluated for microdeletions of <5 megabases using chromosomal microarray. In 20 cases, 5 samples with no microdeletions were investigated for 150 target genes using CES. A pathogenic variant at chromosome X BMP15, c.661T>C, p.W221R, HET-XL-VUS was observed in one patient (reclassification).

conclusionCytogenetic evaluation of women with amenorrhea was performed in this study. One of the main etiological factors for primary amenorrhea is aberrant karyotypes. Identifying the underlying genetic cause may aid in devising effective treatment strategies. In addition, early diagnosis may enable treatment planning by the family before amenorrhea occurs.

Indexed as

AmenorrheaGenetic VariationAdolescentAdultExome SequencingFemaleHumansKaryotypingYoung Adultamenorrheachromosomal abnormalitieschromosomal microarrayclinical exome sequencingkaryotyping

Identifiers

PMID40516947
PMCPMC12199654

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.