Evidence map›Paper›PMID 40523005›Full record

ArticlePLoS computational biology2025

Uncovering the impact of randomness in HIV hotspot formation: A mathematical modeling study.

Nao Yamamoto, Daniel T Citron, Samuel M Mwalili, Duncan K Gathungu, Diego F Cuadros, Anna Bershteyn

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Nao YamamotoDepartment of Population Health, New York University Grossman School of Medicine, New York, New York, United States of America.ORCID 0000-0003-3131-2368
Daniel T CitronDepartment of Population Health, New York University Grossman School of Medicine, New York, New York, United States of America.
Samuel M MwaliliStrathmore University, Ole Sangale Road, Nairobi, Kenya.
Duncan K GathunguStrathmore University, Ole Sangale Road, Nairobi, Kenya.
Diego F CuadrosDigital Epidemiology Laboratory, Digital Futures, University of Cincinnati, Cincinnati, Ohio, United States of America.
Anna BershteynDepartment of Population Health, New York University Grossman School of Medicine, New York, New York, United States of America.ORCID 0000-0002-6604-7093

Funding

Rapid Tests for Recent Infection (RTRI) for Precision Public Health in Sub-Saharan Africa: Next-Generation Strategies Amid Changing HIV EpidemiologyR01AI174932 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Ronald Scott Braithwaite · 2023 to 2026
$3.0M
Drug concentration measurement for HIV prevention targets: toward a population-based HIV impact assessment (PHIA) for PrEPR01AI179417 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Anna Bershteyn, Dobromir Dimitrov · 2024 to 2026
$2.5M
When are in-person HIV services worth the risk of COVID-19 and other communicable illnesses? Optimizing choices when virtual services are less effectiveR01MH130238 · NIMH · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BERSHTEYN, ANNA · 2022 to 2024
$2.2M
NIAID NIH HHS R01 AI174932NIAID NIH HHS R01 AI179417NIMH NIH HHS R01 MH130238
6 · The paper itself

Abstract

backgroundHIV hotspots, regions with higher prevalence than surrounding areas, are observed across Africa, yet their formation and persistence mechanisms remain poorly understood. We hypothesized that random fluctuations during the early stages of the HIV epidemic (1978-1982), amplified by positive feedback between HIV incidence and prevalence, play a critical role in hotspot formation and persistence. To explore this, we applied a network-based HIV transmission model, focusing on randomness in the spatial structure of the epidemic.

methodsWe adapted a previously validated agent-based network HIV transmission model, EMOD-HIV, to simulate HIV spread in western Kenya communities. The model includes demographics, age-structured social networks, and HIV transmission, prevention, and treatment. We simulated 250 identical communities, introducing stochastic fluctuations in network structure and case importation. Outliers were defined as communities with prevalence > 1.5x the median, and persistence as meeting these criteria for >70% of 1980-2050. We systematically varied community size (1,000-10,000), importation timing (1978-1982), and importation patterns (spread over 1, 3, or 5 years), and calculated the proportion of outliers and persistent outliers.

resultsHIV prevalence outliers were more common in smaller communities: in 1990, 25.3% (uncertainty interval: 22.3%-28.2%) of 1,000-person communities vs. 9.1% (uncertainty interval: 6.9%-11.4%) of 10,000-person communities. By 2050, 21.6% of 1,000-person communities were persistent outliers, compared to none in larger communities. Autocorrelation of HIV prevalence was high (Pearson's correlation coefficient 0.801 [95% CI: 0.796-0.806] for 1,000-person communities), reflecting feedback that amplified early fluctuations.

conclusionsEarly random fluctuations contribute to the emergence and persistence of prevalence outliers, especially in smaller communities. Recognizing the role of randomness in prevalence outlier formation in these settings is crucial for refining HIV control strategies, as traditional methods may overlook these areas. Adaptive surveillance systems can enhance detection and intervention efforts for HIV and future pandemics.

Indexed as

HIV InfectionsComputational BiologyComputer SimulationEpidemicsFemaleHumansIncidenceKenyaPrevalence

Identifiers

PMID40523005
PMCPMC12201661

What Socratic holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.