Evidence map›Paper›PMID 40525513›Full record

ArticleThe Journal of animal ecology2025

Network dynamics revealed from eDNA highlight seasonal variation in urban mammal communities.

Jane Hallam, Nyeema C Harris

Abstract read
In one paragraph

Article in The Journal of animal ecology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jane HallamApplied Wildlife Ecology Lab, Yale School of the Environment, Yale University, New Haven, Connecticut, USA.ORCID https://orcid.org/0000-0003-3406-7054
Nyeema C HarrisApplied Wildlife Ecology Lab, Yale School of the Environment, Yale University, New Haven, Connecticut, USA.ORCID https://orcid.org/0000-0001-5174-2205

Funding

High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
Division of Environmental Biology IOS/2140322National Science FoundationNIH HHS S10 OD030363
6 · The paper itself

Abstract

Urban ecosystems are expanding rapidly, significantly altering natural landscapes and impacting biodiversity. Here we explore seasonal variation in mammal diversity using environmental DNA (eDNA) from soil samples collected during winter and summer across 21 urban parks in Detroit, Michigan. We estimated gamma (regional), alpha (local) and beta (compositional change) diversity to determine if seasonal shifts, reflecting winter scarcity and summer abundance in mammal community composition and human activity, could be detected using eDNA. We expected that larger parks would exhibit greater diversity and higher seasonal turnover, consistent with the species-area relationship (SAR) and hypothesised that increased summer resource availability would lead to decreased network density as species disperse more broadly. We found that urban parks show subtle, park-specific changes in community composition influenced by both ecological and anthropogenic factors, with species including striped skunk, brown rat and groundhog responsible for the observed seasonal variation. Consistent with the SAR, larger parks supported higher species richness and diversity. Ecological network analysis, focusing on metrics such as clustering coefficient and network density, revealed a decrease in the overall connectivity and cohesiveness of species interactions from winter to summer, supporting our hypothesis of broader species dispersal during resource-rich periods. Notably, human DNA was prevalent in all parks, alongside detections of pig and cow eDNA, potentially reflecting human disturbance and anthropogenic food inputs. Our findings underscore the efficacy of eDNA analysis in capturing urban mammal community dynamics, the impact of human activities on biodiversity and its potential as a valuable tool for urban ecological research. Ultimately, enhancing monitoring capacity aids in conservation and urban planning efforts that will promote human-wildlife coexistence and preserve the socio-ecological benefits stemming from biodiversity across cityscapes.

Indexed as

BiodiversityDNA, EnvironmentalMammalsAnimalsCitiesEcosystemHumansMichiganSeasonsDNA, Environmentalbiodiversityenvironmental DNAgreen spaceshuman‐wildlife interactionsmammal community dynamicsurban ecology

Identifiers

PMID40525513
PMCPMC12326062

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.