Evidence map›Paper›PMID 40529102›Full record

ArticleOphthalmology science

Next-Generation Sequencing-Based Molecular Profiling of Conjunctival Squamous Cell Carcinoma and Its Potential Application for Therapy.

Hakan Demirci, Josh N Vo, Yi-Mi Wu, Victor Elner, Arul M Chinnaiyan, Dan Robinson, F Yesim Demirci

Abstract read
In one paragraph

Article in Ophthalmology science. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hakan DemirciDepartment of Ophthalmology and Visual Sciences, Kellogg Eye Center, University of Michigan, Ann Arbor, Michigan.
Josh N VoMichigan Center for Translational Pathology, University of Michigan, Ann Arbor, Michigan.
Yi-Mi WuMichigan Center for Translational Pathology, University of Michigan, Ann Arbor, Michigan.
Victor ElnerDepartment of Ophthalmology and Visual Sciences, Kellogg Eye Center, University of Michigan, Ann Arbor, Michigan.
Arul M ChinnaiyanMichigan Center for Translational Pathology, University of Michigan, Ann Arbor, Michigan.
Dan RobinsonMichigan Center for Translational Pathology, University of Michigan, Ann Arbor, Michigan.
F Yesim DemirciDepartment of Human Genetics, School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania.

Funding

Integrative Multiomics and Clinical Laboratory Translation for Advanced, Rare, and Pediatric CancersR50CA293826 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Dan Russel Robinson · 2024 to 2026
$479k
NCI NIH HHS R50 CA293826
6 · The paper itself

Abstract

Objective: Targeted next-generation sequencing-based genomic and transcriptomic analyses of conjunctival squamous cell carcinoma (cSCC) samples using a panel of >1700 cancer-related genes. Design: Prospective case series. Participants: Twenty patients with invasive cSCC consecutively managed at an academic ocular oncology setting. Methods: Integrative exome and transcriptome analysis of fresh-frozen tumor and matching normal samples. Main Outcome Measures: Molecular characterization of invasive cSCCs (for somatic mutations, tumor mutation burden (TMB) and signatures, structural variations, viral transcripts, outlier gene expression) and its potential clinical applications. Results: Of the 20 invasive cSCCs, only 2 were positive for human papillomavirus (HPV). All 18 HPV-negative tumors had genetic alterations in Conclusions: In our invasive cSCC cohort, HPV infection was not a major contributor to tumor etiopathogenesis. Our results confirmed the central role of Financial Disclosures: Proprietary or commercial disclosure may be found in the Footnotes and Disclosures at the end of this article.

Indexed as

Conjunctival squamous cell carcinomaCopy number alterationsMutationsTumor mutation burdenUV signature

Identifiers

PMID40529102
PMCPMC12173057

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.