Evidence map›Paper›PMID 40535539›Full record

ArticleFrontiers in cellular and infection microbiology2025

Exploring the evolutionary journey of the lumpy skin disease virus through the phylogenetic and phylo-geo network analysis.

Manjunatha Reddy Gundallahalli Bayyappa, Manoj Kumar Goud Pyatla, Sai Mounica Pabbineedi, Narasimha Tanuj Gunturu, Sai Manohar Peela, Sudeep Nagaraj, Sunil Tadakod, Ravi Kumar Gandham, Baldev Raj Gulati

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Manjunatha Reddy Gundallahalli Bayyappa *Capripoxvirus Lab, Veterinary Pathology, Indian Council of Agricultural Research (ICAR)-National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI), Bengaluru, Karnataka, India.
Manoj Kumar Goud Pyatla *Animal Biotechnology Division, Indian Council of Agricultural Research (ICAR)-National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Sai Mounica PabbineediCapripoxvirus Lab, Veterinary Pathology, Indian Council of Agricultural Research (ICAR)-National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI), Bengaluru, Karnataka, India.
Narasimha Tanuj GunturuAnimal Biotechnology Division, Indian Council of Agricultural Research (ICAR)-National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Sai Manohar PeelaAnimal Biotechnology Division, Indian Council of Agricultural Research (ICAR)-National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Sudeep NagarajCapripoxvirus Lab, Veterinary Pathology, Indian Council of Agricultural Research (ICAR)-National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI), Bengaluru, Karnataka, India.
Sunil TadakodCapripoxvirus Lab, Veterinary Pathology, Indian Council of Agricultural Research (ICAR)-National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI), Bengaluru, Karnataka, India.
Ravi Kumar GandhamAnimal Biotechnology Division, Indian Council of Agricultural Research (ICAR)-National Bureau of Animal Genetic Resources, Karnal, Haryana, India.
Baldev Raj GulatiCapripoxvirus Lab, Veterinary Pathology, Indian Council of Agricultural Research (ICAR)-National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI), Bengaluru, Karnataka, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Lumpy Skin Disease Virus (LSDV), an emerging pathogen from the Materials and methods: In this study, we report the first isolation and whole genome sequencing of LSDV from Bos frontalis, a semi-domesticated bovine species native to Northeast India, along with the assembly of an isolate from cattle. Results: Time to the Most Recent Common Ancestor (TMRCA) estimates support a relatively recent common origin for Indian strains, pointing to ongoing virus circulation and regional adaptation. The maximum likelihood phylogenetic tree of the whole genome and G protein-coupled chemokine receptor (GPCR) gene further demonstrated the clustering of global strains, emphasizing the virus's transboundary movement and genomic diversity. To strengthen phylogenetic inference, we identified shared SNPs, synonymous and non-synonymous mutations across the genome with a total of 2212 variants. Haplotype network and mutation pattern analyses across global genomes further highlighted the conservative evolution of Indian isolates within a distinct haplogroup. Discussion: Several mutation events between haplogroups highlight the virus's continuous genetic diversification, which correlates with known patterns of spread.

Indexed as

Evolution, MolecularLumpy Skin DiseaseLumpy skin disease virusPhylogenyAnimalsCattleGenetic VariationGenome, ViralHaplotypesIndiaMutationPhylogeographyPolymorphism, Single NucleotideWhole Genome Sequencinggenetic diversityhaplotype networklumpy skin disease virusphylogenetic analysisTMRCAtransboundary spread

Identifiers

PMID40535539
PMCPMC12174415

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.