Evidence map›Paper›PMID 40548737›Full record

ArticleMicrobiology spectrum2025

Application of targeted metagenomic next-generation sequencing in pneumonia patients.

Guanjun Ren, Liyun Ma, Chunliang Yan, Qishan Xue, Huijuan Zhang, Wei Wang, Xiyan Ren, Yun Lei, Shaofei Li, Yafeng Liu and 4 more

Abstract read
In one paragraph

Article in Microbiology spectrum, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Guanjun Ren *Pulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.ORCID 0000-0003-4155-6075
Liyun Ma *Pulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Chunliang YanPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.ORCID 0000-0003-4893-6695
Qishan XuePulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Huijuan ZhangPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Wei WangPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Xiyan RenPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Yun LeiPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Shaofei LiPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Yafeng LiuPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.ORCID 0009-0002-3271-6348
Qingyue ZhengPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Shigang WeiPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Yue ZhangPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.
Xiao WangPulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

After the coronavirus disease 2019 (COVID-19) pandemic, the incidence rate of mixed infections, especially in critically ill patients with severe pneumonia, increases due to the immunity gap and has also been proven to be associated with mortality, increasing the difficulty in accurate and rapid diagnoses. Here, we evaluated the performance of targeted metagenomic next-generation sequencing (mNGS), including capture hybridization-based mNGS (chNGS) and multiplex PCR-based targeted mNGS (tNGS), in diagnosing pneumonia. Patients admitted to the Pulmonary and Critical Care Medicine, Beijing Aerospace General Hospital, and diagnosed as suspected pulmonary infections from April 2022 to March 2024 were retrospectively evaluated, and 110 patients were finally enrolled. According to the final comprehensive clinical diagnoses, there were 99 patients diagnosed with definite infectious diseases. Single infections accounted for 58.6% of these patients (58/99), while mixed infections occurred in about half of these patients (41.4%, 41/99) and were found in most of the death cases.

Indexed as

High-Throughput Nucleotide SequencingMetagenomicsPneumoniaAdultAgedAged, 80 and overBacteriaCoinfectionCOVID-19FemaleHumansMaleMiddle AgedMultiplex Polymerase Chain ReactionRetrospective StudiesSARS-CoV-2capture hybridizationmixed infectionsmultiplex PCRpneumoniatargeted metagenomic next-generation sequencing

Identifiers

PMID40548737
PMCPMC12323347

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.