Evidence map›Paper›PMID 40569290›Full record

ArticleCancer immunology research2025

SF3B1K700E Neoantigen Is a CD8+ T-cell Target Shared across Human Myeloid Neoplasms.

Melinda A Biernacki, Jessica Lok, Kimberly A Foster, Carrie Cummings, Stephanie Busch, R Graeme Black, Suhita Ray, Laura Baquero Galvis, Tim Monahan, Stephen T Oh and 6 more

Abstract read
In one paragraph

Article in Cancer immunology research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. The cellular landscape of druggable RNA-binding proteins.Nature reviews. Drug discovery · 2026
    Review
  2. Review
  3. Splicing-driven post-translational dysregulation: a new frontier for precision cancer medicine and immunotherapy.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Review
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Melinda A Biernacki *Translational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0000-0002-9527-0905
Jessica Lok *Translational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0009-0003-7895-1244
Kimberly A FosterTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0009-0003-2262-6856
Carrie CummingsTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0009-0003-8441-6299
Stephanie BuschTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0000-0003-4158-595X
R Graeme BlackTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0000-0002-3422-9175
Suhita RayInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington.ORCID 0000-0003-0887-6640
Laura Baquero GalvisInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington.ORCID 0009-0008-1478-0964
Tim MonahanTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0009-0007-3006-2746
Stephen T OhDivision of Hematology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri.ORCID 0000-0002-8564-5400
Vivian G OehlerTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0000-0002-1630-4151
Derek L StirewaltTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0000-0003-4151-3171
David WuDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington.ORCID 0000-0001-7729-5730
H Joachim DeegTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0000-0002-4426-9023
Sergei DoulatovInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington.ORCID 0000-0002-1328-364X
Marie BleakleyTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington.ORCID 0000-0002-7018-8702

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Development of Innovative Resources to Advance MDS ResearchRC2DK127989 · NIDDK · FRED HUTCHINSON CANCER CENTER · PI Marie Bleakley, Sergei Doulatov · 2023 to 2026
$6.2M
Functional and molecular consequences of SF3B1 mutations in human hematopoietic stem cellsR01HL151651 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Robert K Bradley, Sergei Doulatov · 2020 to 2026
$4.0M
The role of lamin B1 in normal and myelodysplastic hematopoiesisR01HL169156 · NHLBI · UNIVERSITY OF WASHINGTON · PI Sergei Doulatov · 2023 to 2026
$2.1M
Center for Cancer Research (CCR) P30 CA015704-46MPN Research Foundation (MPNRF) Challenge GrantNational Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) 5 RC2 DK127989National Marrow Donor Program (NMDP) Amy Strelzer Manasevit Research ProgramNCI NIH HHS P30 CA015704NHLBI NIH HHS R01 HL151651NHLBI NIH HHS R01 HL169156NIDDK NIH HHS RC2 DK127989
6 · The paper itself

Abstract

Acquired mutations in spliceosome genes in early hematopoietic stem/progenitor cells are common events in myelodysplastic neoplasms (MDS) and related myeloid malignancies. Mutations in the spliceosome factor subunit B1 (SF3B1) gene occur in ≥20% of MDS cases at conserved hotspots and in early neoplastic clones as driver events. Neoantigens from aberrant SF3B1 proteins could serve as shared T-cell therapy targets for SF3B1-mutated myeloid neoplasms. We identified a candidate neoantigen from the prevalent SF3B1K700E variant using in silico predictions of epitope processing and presentation and then validated presentation and immunogenicity in vitro. CD8+ T cells recognizing SF3B1K700E demonstrated high functional avidity and killed neoplastic myeloid cell lines and primary cells in an antigen-specific manner. We then sequenced, cloned, and transduced an SF3B1K700E-specific T-cell receptor into third-party T cells and confirmed that T-cell receptor transfer conferred antigen specificity and killing of neoplastic myeloid cells in vitro and in vivo. The data indicate that the SF3B1K700E neoantigen represents a promising T-cell target for patients with SF3B1-mutated MDS and acute myeloid leukemia.

Indexed as

Antigens, NeoplasmCD8-Positive T-LymphocytesMyelodysplastic SyndromesPhosphoproteinsRNA Splicing FactorsAnimalsCell Line, TumorHumansMiceMutationAntigens, NeoplasmPhosphoproteinsRNA Splicing FactorsSF3B1 protein, human

Identifiers

PMID40569290
PMCPMC12858050

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.