Evidence map›Paper›PMID 40577119›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Light controls gene functions through alternative splicing in fungi.

Yifan Li, Huanhong Lu, Degang Guo, Xiaoyan Li, Fei Qi, Jian Zhang, Reinhard Fischer, Qirong Shen, Zhenzhong Yu

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yifan LiJiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0009-0001-6822-9536
Huanhong LuJiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Degang GuoJiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Xiaoyan LiJiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Fei QiState Key Laboratory of Cellular Stress Biology, Department of Genetics and Developmental Biology, School of Life Sciences, Xiamen University, Xiamen 361102, China.ORCID 0000-0003-4578-0146
Jian ZhangJiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Reinhard FischerDepartment of Microbiology, Institute for Applied Biosciences, Karlsruhe Institute of Technology-South Campus, Karlsruhe D-76131, Germany.ORCID 0000-0002-6704-2569
Qirong ShenJiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Zhenzhong YuJiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0003-3748-3053

Funding

China Postdoctoral Science Foundation (China Postdoctoral Foundation Project) 2024M751441JST | Jiangsu Natural Science Foundation | Outstanding Youth Foundation of Jiangsu Province (Outstanding Youth Foundation of Jiangsu Province of China) BK20240091JST | Natural Science Foundation of Jiangsu Province (Jiangsu Natural Science Foundation) BK20241554MOST | National Key Research and Development Program of China (NKPs) 2024YFD1700700National Natural Science Foundation of China 32270053National Natural Science Foundation of China 32402684Outstanding Postdoctoral Program of Jiangsu Province 2024ZB328Postdoctoral Fellowship Program of CPSF GZC20240711
6 · The paper itself

Abstract

Light controls important biological processes in fungi by regulating transcriptional gene activation. Here, we found that beyond the regulation of mRNA transcript abundance, light regulates alternative splicing (AS) in the filamentous fungi

Indexed as

Alternative SplicingAspergillus nidulansGene Expression Regulation, FungalLightNeurospora crassaFungal ProteinsPhosphorylationFungal Proteinsalternative splicingconidiationergothioneine biosynthesisfungilight sensing

Identifiers

PMID40577119
PMCPMC12232718

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.