Evidence map›Paper›PMID 40577378›Full record

ArticlePloS one2025

Genome-wide landscape of miRNA-mRNA-lncRNA-circRNA ceRNA network in Nanos2 deficient mice.

Hongyi Li, Yuan Li, Yuting Wang, Lijian Liu, Ji Cui, Mao Zhang, Yiming Yan

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hongyi LiCollege of Biology and Agriculture, Shaoguan University, Guangdong, China.
Yuan LiCollege of Biology and Agriculture, Shaoguan University, Guangdong, China.
Yuting WangCollege of Biology and Agriculture, Shaoguan University, Guangdong, China.
Lijian LiuCollege of Biology and Agriculture, Shaoguan University, Guangdong, China.
Ji CuiCollege of Biology and Agriculture, Shaoguan University, Guangdong, China.
Mao ZhangCollege of Biology and Agriculture, Shaoguan University, Guangdong, China.ORCID 0000-0001-6354-8709
Yiming YanCollege of Biology and Agriculture, Shaoguan University, Guangdong, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nanos2 plays a key role in self-renewing spermatogenic stem cells (SSCs) and maintains the stem cell state during spermatogenesis. Alleles of the Nanos2 gene knockout showed germline ablated but otherwise structurally normal. To identify the probable ceRNA regulator involved in the process of spermatogenesis by Nanos2, whole transcriptome sequencing was performed in the testes between Nanos2 knock out mice and wild type mice. Finally, a total of 8644 Differentially expressed (DE) mRNAs,180 DE miRNAs, 9538 DE lncRNA and 481 DE circRNAs were identified. Three of each RNAs were selected randomly and identified by real-time PCR to verify the accuracy of sequencing. GO and KEGG functional enrichment analyses revealed similar result of DE mRNAs and target of DE miRNAs/lncRNAs/ circRNAs, mainly involved in the generation, composition, and activity of sperm cells. Furthermore, the regulatory ceRNA network of miRNA(up)-circRNA-lncRNA-mRNA and miRNA(down)-circRNA-lncRNA-mRNA were constructed based on the common targeted miRNA.The results enable us to better understand the interaction of coding RNA and non coding RNA in regulating the generation of spermatogenic stem cells through Nanos2 pathway, and also provided novel insights into molecular mechanism of spermatogenesis.

Indexed as

Gene Regulatory NetworksMicroRNAsRNA-Binding ProteinsRNA, CircularRNA, Long NoncodingRNA, MessengerAnimalsGene Expression ProfilingMaleMiceMice, KnockoutRNA, Competitive EndogenousSpermatogenesisTestisMicroRNAsNanos2 protein, mouseRNA-Binding ProteinsRNA, CircularRNA, Competitive EndogenousRNA, Long NoncodingRNA, Messenger

Identifiers

PMID40577378
PMCPMC12204511

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.