Evidence map›Paper›PMID 40640449›Full record

ArticleScientific reports2025

The subcellular topology of the RNAi machinery is multifaceted and reveals adherens junctions as an epithelial hub.

Joyce Nair-Menon, Christina Kingsley, Houda Mesnaoui, Alyssa Risner, Jordan E Jarvis, Peter Lin, Kyrie Wilson, Bärbel Rohrer, Antonis Kourtidis

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Joyce Nair-MenonDepartment of Regenerative Medicine and Cell Biology, Medical University South Carolina, Charleston, SC, USA.
Christina KingsleyDepartment of Regenerative Medicine and Cell Biology, Medical University South Carolina, Charleston, SC, USA.
Houda MesnaouiDepartment of Regenerative Medicine and Cell Biology, Medical University South Carolina, Charleston, SC, USA.
Alyssa RisnerDepartment of Regenerative Medicine and Cell Biology, Medical University South Carolina, Charleston, SC, USA.
Jordan E JarvisDepartment of Regenerative Medicine and Cell Biology, Medical University South Carolina, Charleston, SC, USA.
Peter LinDepartment of Regenerative Medicine and Cell Biology, Medical University South Carolina, Charleston, SC, USA.
Kyrie WilsonDepartment of Ophthalmology, Medical University South Carolina, Charleston, SC, USA.
Bärbel RohrerDepartment of Ophthalmology, Medical University South Carolina, Charleston, SC, USA.
Antonis KourtidisDepartment of Regenerative Medicine and Cell Biology, Medical University South Carolina, Charleston, SC, USA. kourtidi@musc.edu.

Funding

Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI John J Lemasters · 2009 to 2026
$42.7M
The role of SMAD1 and SATB2 in colon patterningP20GM130457 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI John J Lemasters · 2020 to 2026
$18.7M
T-COHR: Training in Craniofacial and Oral Health ResearchT32DE017551 · NIDCR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI YAO, HAI · 2006 to 2025
$10.3M
Proteomics CoreP30DK123704 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Garth R Swanson · 2020 to 2026
$8.8M
Cellular, Biochemical and Molecular Sciences Training Program: Developing the skills and expertise needed for a changing biomedical landscapeT32GM132055 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Amy D Bradshaw, John P O'Bryan · 2019 to 2026
$3.9M
Functional Analysis of Complement Variants in a Genotyped iPSC Epithelial Cell Model SystemR01AI180047 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Alfred Hyoungju Kim, Baerbel Rohrer · 2024 to 2026
$2.3M
Sex and Gender Supplement to Elastase and Elastin Peptide Activity in Age-Related Macular DegenerationR01EY030072 · NEI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ROHRER, BAERBEL · 2020 to 2024
$1.9M
Colon cell mechanoregulation through an E-cadherin - associated RNAi machineryR01DK136658 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Antonis Kourtidis · 2024 to 2026
$1.4M
Epithelial adherens junctions regulate colon cell behavior through RNAi and lncRNAsR01DK124553 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KOURTIDIS, ANTONIS · 2021 to 2024
$1.3M
Digestive Disease Training ProgramT32DK124191 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI STEPHEN A DUNCAN, Antonis Kourtidis · 2021 to 2026
$1.0M
PIWI - Transposon regulation by epithelial adherens junctionsR21CA246233 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KOURTIDIS, ANTONIS · 2020 to 2021
$384k
Oral pathogen - mediated pro-tumorigenic transformation through disruption of an Adherens Junction - associated RNAi machineryF30DE033286 · NIDCR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Christina Rachel Kingsley · 2023 to 2026
$158k
BLRD VA I01 BX003050BLRD VA IK6 BX004858Medical University of South Carolina (MUSC), United States BlueSky AwardNCI NIH HHS P30 CA138313NCI NIH HHS R21 CA246233NCI NIH HHS R21CA246233NEI NIH HHS NEIEY030072NEI NIH HHS R01 EY030072NIAID NIH HHS R01 AI180047NIDCR NIH HHS F30 DE033286NIDCR NIH HHS F30DE033286NIDCR NIH HHS T32 DE017551NIDDK NIH HHS F31 DK138780NIDDK NIH HHS P30 DK123704NIDDK NIH HHS R01 DK124553NIDDK NIH HHS R01DK124553NIDDK NIH HHS R01 DK136658NIDDK NIH HHS T32 DK124191NIDDK NIH HHS T32DK124191NIGMS NIH HHS P20 GM130457NIGMS NIH HHS P20GM130457NIGMS NIH HHS T32 GM132055NIGMS NIH HHS T32GM132055RRD VA I01 RX000444Southern Regional Educational Board (SREB) Dissertation AwardState of South Carolina SmartState EndowmentU.S. Department of Veterans Affairs RX000444
6 · The paper itself

Abstract

The RNA interference (RNAi) machinery is a key cellular mechanism catalyzing biogenesis and function of miRNAs to post-transcriptionally regulate mRNA expression. The RNAi machinery includes a set of protein complexes with subcellular localization traditionally presented in a uniform fashion: the microprocessor processes miRNAs in the nucleus, whereas the DICER and the RNA-induced silencing complex (RISC) further process and enable activity of miRNAs in the cytoplasm. However, several studies have identified subcellular patterns of RNAi components that deviate from this model. We have particularly shown that RNAi complexes associate with the adherens junctions of well-differentiated epithelial cells, through the E-cadherin partner PLEKHA7. To assess the extent of these subcellular topological patterns, we examined subcellular localization of the microprocessor and RISC in a series of human cell lines and normal human tissues. Our results show that junctional localization of RNAi components is a broad characteristic of differentiated epithelia, but it is absent in transformed or mesenchymal cells and tissues. We also find extensive localization of the microprocessor in the cytoplasm, as well as of RISC in the nucleus. These findings expose a RNAi machinery with multifaceted subcellular topology that may inform its physiological role and calls for updating of the current models.

Indexed as

Adherens JunctionsEpithelial CellsRNA InterferenceCadherinsCell LineCell NucleusCytoplasmHumansMicroRNAsRibonuclease IIIRNA-Induced Silencing ComplexCadherinsMicroRNAsRibonuclease IIIRNA-Induced Silencing Complex

Identifiers

PMID40640449
PMCPMC12246189

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.