Evidence map›Paper›PMID 40640530›Full record

ArticleNature methods2025

De novo assembly and delivery of synthetic megabase-scale human DNA into mouse early embryos.

Yue Liu, Jianting Zhou, Duo Liu, Xiaoyu Hu, Lin Yang, Xue-Ru Song, Xiao-Dong Jin, Wei Xie, Luhan Yang, Zichuan Liu and 1 more

Abstract read
In one paragraph

Article in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Technologies for engineering repetitive DNA.Quantitative biology (Beijing, China) · 2026
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yue Liu *State Key Laboratory of Synthetic Biology, Frontiers Research Institute for Synthetic Biology, Tianjin University, Tianjin, China.ORCID http://orcid.org/0000-0002-8051-5156
Jianting Zhou *State Key Laboratory of Synthetic Biology, Frontiers Research Institute for Synthetic Biology, Tianjin University, Tianjin, China.ORCID http://orcid.org/0000-0002-8909-5290
Duo LiuState Key Laboratory of Synthetic Biology, Frontiers Research Institute for Synthetic Biology, Tianjin University, Tianjin, China.ORCID http://orcid.org/0000-0003-0867-1370
Xiaoyu HuCenter for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, New Cornerstone Science Laboratory, School of Life Sciences, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0002-8524-4092
Lin YangDepartment of Gynecology and Obstetrics, Centre for Reproductive Medicine, Tianjin Key Laboratory of Female Reproductive Health and Eugenics, Tianjin Medical University General Hospital, Tianjin, China.
Xue-Ru SongDepartment of Gynecology and Obstetrics, Centre for Reproductive Medicine, Tianjin Key Laboratory of Female Reproductive Health and Eugenics, Tianjin Medical University General Hospital, Tianjin, China.
Xiao-Dong JinDepartment of Urology, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Wei XieCenter for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, New Cornerstone Science Laboratory, School of Life Sciences, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0003-2126-3849
Luhan YangQihan Biotech, Hangzhou, China.
Zichuan LiuState Key Laboratory of Synthetic Biology, Frontiers Research Institute for Synthetic Biology, Tianjin University, Tianjin, China.
Ying-Jin YuanState Key Laboratory of Synthetic Biology, Frontiers Research Institute for Synthetic Biology, Tianjin University, Tianjin, China. yjyuan@tju.edu.cn.ORCID http://orcid.org/0000-0003-0553-0089

Funding

National Natural Science Foundation of China (National Science Foundation of China) 21621004
6 · The paper itself

Abstract

Epigenetic modifications on natural chromosomes are inherited and maintained in a default state, making it challenging to remove intrinsic marks to study the fundamental principles of their establishment and further influence on transcriptional regulation. In this study, we developed SynNICE, a method for assembling and delivering intact, naive, synthetic megabase (Mb)-scale human DNA into early mouse embryos, to study de novo epigenetic regulation. By assembling and delivering a 1.14-Mb human AZFa (hAZFa) locus, we observed the spontaneous incorporation of murine histones and the establishment of DNA methylation at the one-cell stage. Notably, DNA methylation from scratch strongly enriches at repeat sequences without H3K9me3 reinforcement. Furthermore, the transcription of hAZFa initiated at the four-cell stage is regulated by newly established DNA methylation. This method provides a unique platform for exploring de novo epigenomic regulation mechanisms in higher animals.

Indexed as

DNAEmbryo, MammalianAnimalsDNA MethylationEpigenesis, GeneticEpigenomicsFemaleGene Expression Regulation, DevelopmentalHistonesHumansMiceDNAHistones

Identifiers

PMID40640530
PMCPMC12328230

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.