Evidence map›Paper›PMID 40646305›Full record

ArticleNature aging2025

Characterizing primary and secondary senescence in vivo.

Yuko Sogabe, Hirofumi Shibata, Mio Kabata, Akito Tanaka, Kanae Mitsunaga, Kazunori Sunadome, May Nakajima-Koyama, Michitada Hirano, Eisuke Nishida, Knut Woltjen and 3 more

Abstract read
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In one paragraph

Article in Nature aging, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yuko SogabeDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0002-0623-3871
Hirofumi ShibataDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Mio KabataDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Akito TanakaDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Kanae MitsunagaDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Kazunori SunadomeDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
May Nakajima-KoyamaDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Michitada HiranoDepartment of Molecular Pathology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Eisuke NishidaRIKEN Center for Biosystems Dynamics Research (BDR), Kobe, Japan.
Knut WoltjenDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0003-2293-1183
Hiroshi SenoDepartment of Gastroenterology and Hepatology, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Yasuhiro YamadaDepartment of Molecular Pathology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan. yyamada@m.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-2463-1478
Takuya YamamotoDepartment of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan. takuya@cira.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-0022-3947

Funding

Japan Agency for Medical Research and Development (AMED) JP17gm1110004, JP22bm1223002, JP22ama221201, JP22gm1110004, JP22zf0127008, JP223fa627001Japan Agency for Medical Research and Development (AMED) JP17gm1110004, JP22bm1223002, JP22gm1310002, JP21gm1310011, JP24bm1123053MEXT | Japan Science and Technology Agency (JST) JPMJFR206CMEXT | Japan Society for the Promotion of Science (JSPS) 23H05485, 23H00407MEXT | Japan Society for the Promotion of Science (JSPS) JPJSA3F20230001MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR2023
6 · The paper itself

Abstract

There is robust evidence that senescence can be propagated in vitro through mechanisms including the senescence-associated secretory phenotype, resulting in the non-cell-autonomous induction of secondary senescence. However, the induction, regulation and physiological role of secondary senescence in vivo remain largely unclear. Here we generated senescence-inducible mouse models expressing either the constitutively active form of MEK1 or MKK6 and mCherry, to map primary and secondary senescent cells. Our models recapitulate characteristic features of senescence and demonstrate that primary and secondary phenotypes are highly tissue- and inducer-dependent. Spatially resolved RNA expression analyses at the single-cell level reveal that each senescence induction results in a unique transcriptional profile-even within cells of the same cell type-explaining the heterogeneity of senescent cells in vivo. Furthermore, we show that interleukin-1β, primarily derived from macrophages, induces secondary phenotypes. Our findings provide insight into secondary senescence in vivo and useful tools for understanding and manipulating senescence during aging.

Indexed as

AgingCellular SenescenceAnimalsFibroblastsInterleukin-1betaMacrophagesMAP Kinase Kinase 1MAP Kinase Kinase 6MiceMice, Inbred C57BLMice, TransgenicPhenotypeSenescence-Associated Secretory PhenotypeInterleukin-1betaMAP Kinase Kinase 1MAP Kinase Kinase 6

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.