Evidence mapPaperPMID 40650083Full record

ArticleInternational journal of molecular sciences2025

Network Pharmacology, Molecular Dynamics Simulation, and Biological Validation Insights into the Potential of Ligustri Lucidi Fructus for Diabetic Nephropathy.

Manting Liu, Yuhao Gu, Yuchang Yang, Ke Zhang, Jingwen Yang, Wenqi Wang, Wenjing Li, Xinzhu Wang, Xiaoxv Dong, Xingbin Yin and 3 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Manting LiuSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Yuhao GuSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Yuchang YangSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Ke ZhangSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Jingwen YangSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Wenqi WangSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Wenjing LiSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Xinzhu WangSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Xiaoxv DongSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Xingbin YinSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.ORCID 0000-0003-3077-1626
Changhai QuSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.
Boran NiChina Academy of Chinese Medical Sciences, Beijing 100700, China.
Jian NiSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102401, China.

Funding

National Administration of Traditional Chinese Medicine High level Construction Discipline zyyzdxk-2023272
6 · The paper itself

Abstract

Diabetic nephropathy (DN) represents a severe microvascular complication of diabetes mellitus. As a Traditional Chinese Medicine (TCM) with extensive clinical applications, Ligustri Lucidi Fructus (LLF) exhibits significant anti-DN activity. However, the underlying pharmacological mechanisms, crucial components, and targets for LLF in DN treatment remain unclear. By integrating network pharmacology, molecular docking, and molecular dynamics simulations, the bioactive compounds, potential therapeutic targets, and underlying mechanisms of LLF in the treatment of DN were elucidated, followed by biological validation in a palmitic acid (PA)-induced MPC5 podocyte injury model. Among the 383 DN-related LLF targets identified, TNF emerged as a pivotal one, demonstrating potential binding interaction with the active components salidroside (Sal), apigenin (Api), and tormentic acid (TA). Moreover, Gene Expression Omnibus (GEO) database and KEGG enrichment analysis collectively highlighted the cytosolic DNA-sensing pathway. Notably, the cGAS-STING pathway is central to this pathway. Experimental studies further demonstrated that LLF-containing serum exerted a protective effect on MPC5 podocytes through cGAS-STING pathway suppression. Overall, these findings elucidate the pleiotropic mechanisms underlying LLF's protective effects against DN, integrating compound-target-pathway interactions and thus offering a rationale for further investigation.

Indexed as

Diabetic NephropathiesDrugs, Chinese HerbalLigustrumNetwork PharmacologyAnimalsCell LineHumansMiceMolecular Docking SimulationMolecular Dynamics SimulationPodocytesSignal TransductionDrugs, Chinese HerbalcGAS-STINGdiabetic nephropathyLigustri Lucidi Fructusmolecular dockingmolecular dynamics simulationnetwork pharmacology

Identifiers

PMID40650083
PMCPMC12249564

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.