Evidence map›Paper›PMID 40650979›Full record

ReviewNucleic acids research2025

The XNA alphabet.

John C Chaput, Martin Egli, Piet Herdewijn

Abstract readReview
In one paragraph

Review in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. UV photodamage pathways and the evolutionary selection of thymine over uracil in early genetic systems.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

John C ChaputDepartment of Pharmaceutical Sciences, University of California, Irvine, CA 92697-3958, United States.ORCID 0000-0003-1393-135X
Martin EgliDepartment of Biochemistry, School of Medicine, Vanderbilt Ingram Cancer Center, and Vanderbilt Center for Structural Biology, Vanderbilt University, Nashville, TN 37232, United States.ORCID 0000-0003-4145-356X
Piet HerdewijnDepartment of Pharmaceutical Sciences, University of California, Irvine, CA 92697-3958, United States.ORCID 0000-0003-3589-8503

Funding

Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
DNA Adduct-Induced MutagenesisR01ES029357 · NIEHS · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2018 to 2022
$2.6M
DNA Adduct-Induced MutagenesisR56ES029357 · NIEHS · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2024 to 2024
$250k
NCI NIH HHS P01 CA160032NIEHS NIH HHS R01 ES029357NIEHS NIH HHS R56 ES029357NIH HHS P01 CA160032NIH HHS R01 ES029357NSF 2 224 897Vanderbilt University 2 433 788
6 · The paper itself

Abstract

Inspired by nature, chemists have spent the last 50 years systematically designing and synthesizing a vast array of sugar-modified nucleic acids, so-called xenonucleic acids (XNAs), collectively forming what we now describe as the XNA alphabet. Within the alphabet, systems can be categorized into two major groups: those capable of interacting with natural nucleic acids and those that do not cross-pair with DNA or RNA. The sugar component of XNAs plays a crucial role in defining their conformational space, which, in turn, influences their hybridization properties and potential applications across biotechnology and synthetic biology. This review provides an overview of sugar-modified XNA systems developed to date as well as the geometric parameters and physicochemical principles that have enhanced our understanding of XNA conformational behavior, particularly in relation to their orthogonality to (i.e. inability to cross-pair with) natural nucleic acids. These insights are essential for developing a more rational approach to key processes such as XNA replication and evolution, ultimately paving the way for applications in areas including synthetic genetics, nucleic acid therapeutics, diagnostics, and nanotechnology.

Indexed as

DNANucleic AcidsSugarsNucleic Acid ConformationRNASynthetic BiologyDNANucleic AcidsRNASugars

Identifiers

PMID40650979
PMCPMC12255307

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.