Evidence map›Paper›PMID 40667193›Full record

ArticlebioRxiv : the preprint server for biology2025

A facile method for fluorescent visualization of newly synthesized fibrous collagen by capturing the allysine aldehyde groups serving as cross-link precursors.

Junpei Kuroda, Kazunori K Fujii, Sugiko Futaki, Azumi Hirata, Yuki Taga, Takaki Koide

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Junpei KurodaLaboratory of Morphogenesis, JT Biohistory Research Hall, Takatsuki, Osaka, Japan.ORCID 0000-0001-6773-2837
Kazunori K FujiiDepartment of Chemistry and Biochemistry, Waseda University, Shinjuku-ku, Tokyo, Japan.
Sugiko FutakiDepartment of Anatomy and Cell Biology, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka, Japan.ORCID 0000-0002-0481-244X
Azumi HirataDepartment of Anatomy and Cell Biology, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka, Japan.ORCID 0000-0003-3928-5018
Yuki TagaNippi Research Institute of Biomatrix, Toride, Ibaraki, Japan.ORCID 0000-0001-9100-758X
Takaki KoideDepartment of Chemistry and Biochemistry, Waseda University, Shinjuku-ku, Tokyo, Japan.ORCID 0000-0002-0681-6874

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The fibrous structures of collagen provide physical strength and stability to tissues and organs. Abnormalities in their orientation, growth, and remodeling cause morphogenetic defects and serious diseases including fibrosis, so it is important to clarify how collagen fibers are correctly oriented and grown within tissues. However, this mechanism remains elusive, as few methods have been available to fluorescently stain collagen fibers with a simple protocol and to observe their structure in three dimensions. Here we present a facile method that enables fluorescent staining of collagen fibers in vertebrate tissues. In our method using DAF-FM, known as a NO detection probe, premature collagen fibers can be visualized via covalent binding to the allysine residues serving as precursors of cross-linking structures of collagen. In addition, we showed that the labeling method using two fluorescent probes with different colors, DAF-FM and DAR-4M, allows for pulse-chase observation of newly synthesized collagen fibers. Our method will be a breakthrough technique in future collagen studies.

Identifiers

PMID40667193
PMCPMC12262523

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.